BO33374.complete Sequence
1555 bp assembled on 2012-08-22
GenBank Submission: KX795372
> BO33374.complete
GAAGTTATCAGTCGACATGTCGGAAACTTCAGAGGACGAACAGACGCAGC
TACAAACGAGTGACGAAGAGGAGGATCTAGGTAGCGAGGAGGAGCAGGAA
GATGAAGATAACAATCATAAGGAAGGGGACAGCGAGGCGGCACTAAGTGG
TGAAGATGATAAAGGCTCCGAGGACGACGCAGCCGAGGAACAGAAGCTAA
CCTGGAAAGATCTCGGTCTCAATGAGGCTTTGTGTCAAGCATGTGACGAA
TTGAAGTGGAAGGCGCCTTCGAAGATCCAACGTGAGGCCATTCCGGTCGC
CTTACAGGGCAAGGATGTAATTGGCCTAGCGGAGACCGGTTCCGGCAAGA
CGGGCGCCTTCGCTCTGCCAATTTTACACGCCCTTCTCGAGAATCCGCAG
CGGTATTTTGCCCTCGTGCTAACCCCCACGAGGGAACTGGCATTTCAAAT
TGGCGAGCAGTTTGAAGCCCTTGGTAGCGGGATTGGCATAAAGTGTTGCG
TGGTAGTCGGCGGCATGGACATGGTAGCCCAGGGTCTTCAACTGGCCAAG
AAGCCGCATATTATAATTGCCACACCGGGTCGCTTGGTTGATCATCTAGA
AAACATGAAAGGTTTTAACCTTAAGGCTATTAAATACTTGGTCATGGACG
AGGCGGATCGCATTCTTAACATGGATTTTGAGGTGGAGCTGGACAAGATT
CTGAAGGTATTGCCGCGTGAACGACGAACCTTTCTGTTCAGTGCGACCAT
GACCAAGAAAGTAAAGAAACTGCAGCGTGCCTCCCTTAAGGATCCCGTAA
AGGTAGAGGTGTCTAACAAGTATCAGACGGTTGAGCAGCTGCAGCAATCA
TATTTGTTTATCCCTGTCAAATACAAGGATGTGTATTTGGTTCATATCCT
TAATGAGCTGGCAGGCAACAGTTTCATGATATTTTGCAGCACCTGCAACA
ACACGGTTAAGACAGCGTTAATGCTTCGTGCGTTGGGATTGGCTGCTATT
CCGCTGCACGGTCAAATGTCGCAAAACAAGCGACTAGCTGCTTTAAACAA
ATTCAAGGCCAAAAACCGGTCAATACTCATTTCGACGGACGTGGCGTCCC
GCGGCTTGGACATTCCTCATGTGGATGTCGTCGTTAATTTCGACATACCA
ACGCACAGCAAAGACTACATTCACCGCGTGGGAAGAACAGCAAGAGCAGG
TCGCTCCGGCAAAGCCATAACCCTCGTGAGCCAGTACGACATTGAGTTGT
ATCAGCGCATCGAACATCTACTGGGGAAGCAACTGACACTGTATAAGTGC
GAGGAGGATGAGGTGATGGCCCTTCAAGAACGAGTAGCCGAAGCACAGCG
CACTGCAAAACTGGAGCTGAAGGATCTGGAAGATACAAGGGGTGGTCACA
AGAGGGGCGGGGACACCCACGATGATTCGGAGAACTTCACGGGCGCACGC
AAACGCATGAAACCGATGGGCGGCACTGGCGGTGGTGGAAGAAAGAGCTT
TGGCAAAAAGAATTGGAGCAAGGGCAAGCAGAAGAGAGCAAGCTTTCTAG
ACCAT
BO33374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:27:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9253-RA | 1524 | CG9253-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:27:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9253-RA | 1669 | CG9253-RA | 78..1598 | 17..1537 | 7605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21144011..21145075 | 473..1537 | 5325 | 100 | Plus |
| 2L | 23513712 | 2L | 21143564..21143824 | 215..475 | 1305 | 100 | Plus |
| 2L | 23513712 | 2L | 21143306..21143504 | 17..215 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:27:33 has no hits.
BO33374.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:33 Download gff for
BO33374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9253-RA | 80..1600 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:28 Download gff for
BO33374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9253-RA | 78..1598 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:42 Download gff for
BO33374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9253-RA | 78..1598 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:42 Download gff for
BO33374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21143306..21143503 | 17..214 | 100 | -> | Plus |
| 2L | 21143564..21143822 | 215..473 | 100 | -> | Plus |
| 2L | 21144012..21145075 | 474..1539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:28 Download gff for
BO33374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21143306..21143503 | 17..214 | 100 | -> | Plus |
| arm_2L | 21143564..21143822 | 215..473 | 100 | -> | Plus |
| arm_2L | 21144012..21145075 | 474..1539 | 99 | | Plus |
BO33374.pep Sequence
Translation from 16 to 1555
> BO33374.pep
MSETSEDEQTQLQTSDEEEDLGSEEEQEDEDNNHKEGDSEAALSGEDDKG
SEDDAAEEQKLTWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKD
VIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFE
ALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGF
NLKAIKYLVMDEADRILNMDFEVELDKILKVLPRERRTFLFSATMTKKVK
KLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHILNELAG
NSFMIFCSTCNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKN
RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKA
ITLVSQYDIELYQRIEHLLGKQLTLYKCEEDEVMALQERVAEAQRTAKLE
LKDLEDTRGGHKRGGDTHDDSENFTGARKRMKPMGGTGGGGRKSFGKKNW
SKGKQKRASFLDH
BO33374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9253-PA | 507 | CG9253-PA | 1..507 | 1..507 | 2596 | 100 | Plus |
| Dbp45A-PA | 521 | CG12759-PA | 12..417 | 66..463 | 719 | 40.9 | Plus |
| Rs1-PB | 782 | CG2173-PB | 99..518 | 6..415 | 665 | 36.7 | Plus |
| Rs1-PA | 782 | CG2173-PA | 99..518 | 6..415 | 665 | 36.7 | Plus |
| CG10333-PA | 822 | CG10333-PA | 337..778 | 6..412 | 594 | 33.4 | Plus |
