BO33377.complete Sequence
1528 bp assembled on 2012-08-22
GenBank Submission: KX799445
> BO33377.complete
GAAGTTATCAGTCGACATGGGCGTCAAGGTCAAGGAAACGACACCCCAGC
AAATCGAGGAGCTGCGCGATAGGTTCAATCGCAAATATGCCTCATCCCCT
CCGGCAGCACCTTTCCATCCGACCGATATTGATCGTATTCGCAACGATCA
TCTGTGGCTTCAAAGGTTTCTGGAAATGTATGATCTCGACATGGAGACCT
CCTTTAATTCGCTGTGGGAAACCTGTATCTTGCGTCAGTCAACTGGGGCA
AACGATATCGATGAGAGCGAGTTGAACCAGGAGTATTTGAAGGAGGGATC
CGTGTTTGTGCACAACACTGATGTGGATGGCAAGCCGTTGTTGGTATTCC
GCGTTAAGATGCACAGTAAGTCCAAGAACCTGGACGAACTGATACGCATC
GTGGTGTACTGGGTGGAAAGGACTCAGAGGGAGCAGCATCTGACCCAGTT
GACCATATTCTTCGACATGTCGGGCACGAGTTTGGCCTCCATGGATCTGG
AGTTTGTGAAACGCATTGTGGAGACATTTAAGCAGTTCTATCCCAATAGC
TTGAACTACATTTTGGTATATGAACTGGGCTGGGTACTAAATGCTGCTTT
TAAGGTCATCAAGGCGGTGCTGCCACCCAAAGCGGTTGAGATTTTAAAAA
TGATATCGAAAAAGGACATCAACCAGTACATTAACAAGGATAACTGCCTG
GCCATCTGGGGTGGCGAGGATAACTACGAATTTAGCTTTGTGCCGGAGGC
TAAAAAGGTCATTTCCAAACCGGTGGCTGCCAATGCTGGCGATGATGACC
AATTCGCGGACAAAAAGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTC
AAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCA
CATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGCCA
CGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAA
ACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCATCCA
GCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGAGCACAAGC
TTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGCGCCA
GGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCAAATC
CCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTCGATG
AGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCC
AGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTACGGC
AATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGTGACGCTGG
CGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCAGCAG
CTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGTGCGC
TAAGCGCAAAGCAAGCTTTCTAGACCAT
BO33377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RF | 1965 | CG33523-PF | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| Vap-33B-RD | 1497 | CG33523-PD | 1..1494 | 17..1510 | 7470 | 100 | Plus |
| Vap-33B-RE | 858 | CG33523-PE | 1..801 | 17..817 | 4005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RF | 2574 | CG33523-RF | 243..1737 | 16..1510 | 7475 | 100 | Plus |
| Vap-33B-RD | 2574 | CG33523-RD | 243..1737 | 16..1510 | 7475 | 100 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 243..1044 | 16..817 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5924835..5925322 | 106..593 | 2440 | 100 | Plus |
| 3L | 28110227 | 3L | 5928702..5929040 | 993..1331 | 1695 | 100 | Plus |
| 3L | 28110227 | 3L | 5925400..5925626 | 593..819 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 5929104..5929283 | 1331..1510 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 890..994 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5924104..5924195 | 16..107 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 5928222..5928297 | 816..891 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:53:39 has no hits.
BO33377.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 18:30:01 Download gff for
BO33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 51..1544 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:08 Download gff for
BO33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 53..1546 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:14 Download gff for
BO33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RD | 244..1737 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:14 Download gff for
BO33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5928537..5928640 | 891..994 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 995..1330 | 100 | -> | Plus |
| 3L | 5929104..5929283 | 1331..1512 | 98 | | Plus |
| 3L | 5924105..5924195 | 17..107 | 100 | -> | Plus |
| 3L | 5924837..5925322 | 108..593 | 100 | -> | Plus |
| 3L | 5925401..5925624 | 594..817 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 818..890 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:08 Download gff for
BO33377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5917205..5917295 | 17..107 | 100 | -> | Plus |
| arm_3L | 5917937..5918422 | 108..593 | 100 | -> | Plus |
| arm_3L | 5918501..5918724 | 594..817 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 818..890 | 100 | -> | Plus |
| arm_3L | 5921637..5921740 | 891..994 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 995..1330 | 100 | -> | Plus |
| arm_3L | 5922204..5922383 | 1331..1512 | 98 | | Plus |
BO33377.pep Sequence
Translation from 16 to 1528
> BO33377.pep
MGVKVKETTPQQIEELRDRFNRKYASSPPAAPFHPTDIDRIRNDHLWLQR
FLEMYDLDMETSFNSLWETCILRQSTGANDIDESELNQEYLKEGSVFVHN
TDVDGKPLLVFRVKMHSKSKNLDELIRIVVYWVERTQREQHLTQLTIFFD
MSGTSLASMDLEFVKRIVETFKQFYPNSLNYILVYELGWVLNAAFKVIKA
VLPPKAVEILKMISKKDINQYINKDNCLAIWGGEDNYEFSFVPEAKKVIS
KPVAANAGDDDQFADKKVTFVDSAPMVLKETNINKMHTPSEGMLHINPKD
FVNFNSKNAEATMTIKSIATSAVTYKIQTTSPEKFRVRPRCGIIQPNQEA
TINIWLKSEHKLSDDSKDKFLVMAMVAPGGECGGADVTELWRSKSPTSAD
VEQHRLVCRFDENKSKAQLDCASKSSKASVDCSKKSGAGVDPATAMERQL
AFTQNLQYVTLALLFLLFAGFGFLMYQQLGQHAATCPKATAYSCAKRKAS
FLDH
BO33377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-PF | 654 | CG33523-PF | 1..502 | 1..502 | 2593 | 99.4 | Plus |
| Vap-33B-PD | 498 | CG33523-PD | 1..498 | 1..498 | 2592 | 100 | Plus |
| Vap-33B-PE | 285 | CG33523-PE | 1..271 | 1..271 | 1404 | 98.9 | Plus |
| Vap-33B-PA | 234 | CG33523-PA | 3..234 | 267..498 | 1199 | 99.6 | Plus |
| Vap-33B-PC | 240 | CG33523-PC | 10..240 | 268..498 | 1197 | 100 | Plus |
