BO33389.complete Sequence
1585 bp assembled on 2012-10-01
GenBank Submission: KX794322
> BO33389.complete
GAAGTTATCAGTCGACATGAGCTCCTCGAATGCGGGACAGCGCACGAAGC
TAATTCAGGAGAAGTGCCAGACCCTCCTGACGCAGATGCTCCGCGACGAG
GACAACAAGTACTGCGTGGACTGCGATGCCAAGGGTCCGCGCTGGGCCTC
CTGGAACCTGGGCATGTTTCTCTGCATCCGCTGCGCCGGCATCCATCGCA
ATCTGGGCGTGCACATATCGCGCGTCAAGTCCGTCAACCTGGACACTTGG
ACGCCAGAGCAGGTGATCTCGCTGCAGCAGATGGGAAACTCGCGGGCTCG
CGCCGTCTACGAGGCGCAGCTGCCGGACGGCTTCCGTCGCCCGCAGACGG
ACACAGCGCTGGAGAATTTCATCCGGGCCAAGTACGAGCACAAGAAGTAC
CTGGCCCGCGAGTGGGTGCCTCCCTCGCCGCCGAAAGTGGACTGGGCCAA
GGAGATCGACGAGGAGCTTGAGCGCCAGAAGCGCAAGAAGAAGAGCACGC
AGGCCCAGGCCACTTTGGGCCTGGCTGGAGTGGCCGGTGGCAGCGGCGAC
AAGCGCCTGTCCGGGTCATCTGCGTCGGCGCTCAAGAACACCCCCCTGCC
CGCGCCGCTTCCAAAGCCGAAACCCAACCAGGTCGGCGGCTGCAGCCCAA
AGACGACGCAACGCGTCCAGCTGAACAGCAGCGGCGTTAGCAGTGCCGGC
GAAAGCGACCTCTTGGGACTGTCCTCGCCCACCAAGCCCATTGTCGCGAC
CAATGCCAGCCAAGACCTGCAAAACGAAAGTTTCACCAGCTTTCTCAGCG
CCGAATCGATTGCCGGCCAGCCGGATAAGCCGATTGGCAGCAACGGCGAC
GCCGCCAATTTGATGGGCTCGAAGCCGAACTCGCTGGCACAAGAGGAGCA
GGACTTCTTCAACCAGGGCTCACTGGGCGCCGGCGGCAACGAGAAGGATC
AGTCTGGCAAGATGTCCAAGGACAGCATTCTGGCGCTGTACGGCAGCGCG
CCAGCCACCCACAACCCCCAGATGAACTTTGGCGGCTTCACGGGCATGGC
CCCAGGCGGCTATATGCACCAGCAGCAGCAACAGCAGATCCCCCACCAGT
TTATGACACCGCCGAACTCGGTGAGCATGTATAATTCGCCAGTTATGGCT
GCACCGAATGCGTTCAGCAATGCTGCCATCAGCAGTGCCACTGCGATGAG
CATGGGCGGCTCCCATGGCTTTACTGGAGCCCAGTTTCCCAGCACCGGGG
GCAGTCCCTATGCTGCCGCAGGCCAGGCAGCTGCAACAAATCTTATGCAA
ACGAACCAGAGCATTCTCAGTGGGATGCCGCTCTTTGGAGCTGTTCCGCA
ACAGCAGCAGCAACATCAGCAGCAGCTTCAGCAGCAACATCACCCACAGC
TTGGCGGCCTCTCCATGAACTTAATGCAGCCCCTGCCCAGTGGGCTGAAC
ATTGGCCAACCGCCACAAGGAGCGGGCGGATTTGCCGCAACGGGGCCCAC
CACCTCCTCAGTACCGTCAAATCTGAACCAGCAGTTTGGGAATCTTAATA
TCGGTAATGTGTGGCAAGCAAGCTTTCTAGACCAT
BO33389.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8243-RA | 1554 | CG8243-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8243-RA | 2410 | CG8243-RA | 214..1764 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8923267..8924700 | 134..1567 | 7170 | 100 | Plus |
| 2R | 25286936 | 2R | 8922998..8923117 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6857 | 1346..1400 | 167 | 78.2 | Plus |
BO33389.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:51:20 Download gff for
BO33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8243-RA | 211..1761 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:45 Download gff for
BO33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8243-RA | 214..1764 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:43 Download gff for
BO33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8243-RA | 214..1764 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:43 Download gff for
BO33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8922998..8923115 | 17..134 | 100 | -> | Plus |
| 2R | 8923268..8924700 | 135..1569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:45 Download gff for
BO33389.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4810503..4810620 | 17..134 | 100 | -> | Plus |
| arm_2R | 4810773..4812205 | 135..1569 | 99 | | Plus |
BO33389.pep Sequence
Translation from 16 to 1585
> BO33389.pep
MSSSNAGQRTKLIQEKCQTLLTQMLRDEDNKYCVDCDAKGPRWASWNLGM
FLCIRCAGIHRNLGVHISRVKSVNLDTWTPEQVISLQQMGNSRARAVYEA
QLPDGFRRPQTDTALENFIRAKYEHKKYLAREWVPPSPPKVDWAKEIDEE
LERQKRKKKSTQAQATLGLAGVAGGSGDKRLSGSSASALKNTPLPAPLPK
PKPNQVGGCSPKTTQRVQLNSSGVSSAGESDLLGLSSPTKPIVATNASQD
LQNESFTSFLSAESIAGQPDKPIGSNGDAANLMGSKPNSLAQEEQDFFNQ
GSLGAGGNEKDQSGKMSKDSILALYGSAPATHNPQMNFGGFTGMAPGGYM
HQQQQQQIPHQFMTPPNSVSMYNSPVMAAPNAFSNAAISSATAMSMGGSH
GFTGAQFPSTGGSPYAAAGQAAATNLMQTNQSILSGMPLFGAVPQQQQQH
QQQLQQQHHPQLGGLSMNLMQPLPSGLNIGQPPQGAGGFAATGPTTSSVP
SNLNQQFGNLNIGNVWQASFLDH
BO33389.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8243-PA | 517 | CG8243-PA | 1..517 | 1..517 | 2709 | 100 | Plus |
| CenB1A-PB | 598 | CG6742-PB | 156..267 | 23..129 | 248 | 41.1 | Plus |
| CenB1A-PA | 828 | CG6742-PA | 386..497 | 23..129 | 248 | 41.1 | Plus |
| CenG1A-PC | 763 | CG31811-PC | 482..583 | 30..129 | 233 | 42.7 | Plus |
| CenG1A-PA | 927 | CG31811-PA | 646..747 | 30..129 | 233 | 42.7 | Plus |
