Clone BO33392 Report

Search the DGRC for BO33392

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:92
Vector:pDNR-Dual
Associated Gene/TranscriptGckIII-RA
Protein status:BO33392.pep: Imported from assembly
Sequenced Size:1960

Clone Sequence Records

BO33392.complete Sequence

1960 bp assembled on 2012-10-03

GenBank Submission: KX796051

> BO33392.complete
GAAGTTATCAGTCGACATGTCCTGGACGGAGAAAGTCGATCCAGAGCTCA
TCTTCACCAAGCAGGAGCGCATCGGCAAGGGCTCCTTCGGCGAGGTGTTC
AAGGGCATCGACAACCGCACCCAGCAAGTGGTGGCCATCAAGATCATCGA
TCTGGAGGAGGCCGAAGATGAGATCGACGACATCCAGCAGGAGATCATGG
TGCTGTCGCAGTGCGACTCGCCGTACGTGACGAAGTACTATGGCAGCTTT
CTTAAGGGCACCAAGTTATGGATCATCATGGAGTACCTGGGCGGTGGATC
CGCCTTGGACCTCATGAAGGCCGGCTCCTTCGAGGAAATGCACATCGGGA
TCATATTGCGCGAAGTGCTTAAGGGCCTGGACTACCTGCACTCGGAGCGC
AAGCTGCATCGCGACATCAAGGCGGCCAATGTTCTGTTGAGCGAACAGGG
CGATGTCAAGCTGGCGGACTTTGGAGTCGCTGGCCAGCTGACCAACACCA
CATCCAAGAGGAACACCTTCGTGGGCACGCCCTTTTGGATGGCGCCCGAG
GTGATCAAGCAGTCACAGTACGATGCCAAGGCGGACATCTGGTCGTTGGG
CATCACGGCTATCGAACTGGCCAAGGGTGAGCCGCCCAATTCGGAGCTGC
ATCCGATGCGCGTGCTCTTCCTCATCCCCAAGAACAATCCACCCCAGCTG
ACGGGCAGCTATACCAAGTCTTTTAAGGACTTTGTGGAGGCCTGCCTAAA
CAAGGACCCGGAGAACAGGCCCACGGCCAAGGAGCTGCTCAAGTACCCGT
TCATCAAGAAGGCCAAGAAGAACGCCTATCTGATTGACCTGATCGACCGC
TTCAAGAAGTGGAAGGTCTCCAAGGGCGACGAAAGTGAGACGGAGTCTGA
GAACTCTGACTCGGACTCGGACGCCAAGCAGGGCGGCAGCAGCCAGGATG
AGCCCTGGATCATGACCGTCAAGGGCCTGCATATCAACAGTGCTCCGCGG
GCGGGTGTCAACAGCTTCCAGTTGCAGGAGCACGAGCTAACCATGCAGAA
GCTGATGCAGACCACACACTCGCCAGCCGGCGGTGGTGGCGTGCAAGCGT
CCCCTGCTGCAAATGCATTATCGTCCTCTGTGTCCGCCGTGGCGGCGTCA
GCTTCCTCCGTATCGGTCATTACAGCCAACGAAGGTGTCTCCTCTGCATC
CGCCCTGCCCCCCCAGAACAGTCACGTCCACAACCACAACCACAACAACA
TTAACAACAATAACATCAGAAACTTGAGCAACAAGCATGCCACCACCACC
ATGCTGAACGCAGCTCCTCCGCCGAGCAGCGTCACAAGCTCGTCGTCGGC
CAGTGAGCTGCAGCAGAAGCGTTCCAGCTCGAAGCCGGAGCTGCGCCAGT
CGCGATCCGCCGCCCCTCTGGATCAAGTAGAGGATCGCCGTGCCTCTTTG
GGCCTGCCATTGCAGTCGTCGGTTCCGACTCCATCGACGGCTGAGCAGCA
GCAACAGCGCCGCAGCAGCCAACGTGAATCATTCCATGCAAATAACGCCG
CGCTGGTTGCCAGCTGCAGCAGCAGTAGCAACAACCACAGCCACGAGGAG
CATGTGGCCACCAACCATGCCAGCCATGTCAAGCACTCTGGGGCGGGACA
ACGCCTAGTCCAAACGAACAGCGCCTGTCTGAACAACTTCCTCTTCCCCG
TGCTGAGCGACATCCAGCGAAAGTACTCCGGCGGAGGATCTGCAGGAAGC
GGAGGATCAGGCGGCCGTAACATAGGCGTCGGCAGCGACATCGGCGACCT
GAAGTCTGTGTTCGAGCTGGCCGAACGTTCCAGTCCGGGAGTGAGCGACC
TATTTATGAAAGAGCTGATCCACATGCTCGTTCCTGGTTACTCGGAGACG
CGAATCAATACGATCATGGACCGCGCCATACGCAACCGCAAGGCAAGCTT
TCTAGACCAT

BO33392.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
GckIII-RA 1929 CG5169-PA 1..1926 17..1942 9630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
GckIII-RA 2476 CG5169-RA 284..2211 15..1942 9640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17085796..17087723 15..1942 9640 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:33:26 has no hits.

BO33392.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 11:17:11 Download gff for BO33392.complete
Subject Subject Range Query Range Percent Splice Strand
GckIII-RA 265..2190 17..1944 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:15 Download gff for BO33392.complete
Subject Subject Range Query Range Percent Splice Strand
GckIII-RA 286..2211 17..1944 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:46 Download gff for BO33392.complete
Subject Subject Range Query Range Percent Splice Strand
GckIII-RA 286..2211 17..1944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:46 Download gff for BO33392.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17085798..17087723 17..1944 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:15 Download gff for BO33392.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12911520..12913445 17..1944 99   Plus

BO33392.pep Sequence

Translation from 16 to 1960

> BO33392.pep
MSWTEKVDPELIFTKQERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAE
DEIDDIQQEIMVLSQCDSPYVTKYYGSFLKGTKLWIIMEYLGGGSALDLM
KAGSFEEMHIGIILREVLKGLDYLHSERKLHRDIKAANVLLSEQGDVKLA
DFGVAGQLTNTTSKRNTFVGTPFWMAPEVIKQSQYDAKADIWSLGITAIE
LAKGEPPNSELHPMRVLFLIPKNNPPQLTGSYTKSFKDFVEACLNKDPEN
RPTAKELLKYPFIKKAKKNAYLIDLIDRFKKWKVSKGDESETESENSDSD
SDAKQGGSSQDEPWIMTVKGLHINSAPRAGVNSFQLQEHELTMQKLMQTT
HSPAGGGGVQASPAANALSSSVSAVAASASSVSVITANEGVSSASALPPQ
NSHVHNHNHNNINNNNIRNLSNKHATTTMLNAAPPPSSVTSSSSASELQQ
KRSSSKPELRQSRSAAPLDQVEDRRASLGLPLQSSVPTPSTAEQQQQRRS
SQRESFHANNAALVASCSSSSNNHSHEEHVATNHASHVKHSGAGQRLVQT
NSACLNNFLFPVLSDIQRKYSGGGSAGSGGSGGRNIGVGSDIGDLKSVFE
LAERSSPGVSDLFMKELIHMLVPGYSETRINTIMDRAIRNRKASFLDH

BO33392.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
GckIII-PA 642 CG5169-PA 1..642 1..642 3283 100 Plus
hpo-PB 669 CG11228-PB 38..543 9..549 740 34.3 Plus
hpo-PA 669 CG11228-PA 38..543 9..549 740 34.3 Plus
msn-PG 1101 CG16973-PG 27..589 8..542 686 33.7 Plus
msn-PC 1102 CG16973-PC 27..589 8..542 686 33.7 Plus