BO33393.complete Sequence
1612 bp assembled on 2012-10-01
GenBank Submission: KX795016
> BO33393.complete
GAAGTTATCAGTCGACATGTCGGACATTGAGGATGTTTTCGGTGGCTCCG
CCGAGGAGACCAAGCCCGAACCCGATGCCCAGAGCAAAACCAGCGTGGTC
ACCGAGCACACCGAGGAGGTGATTCCCGGCGAGACCGAGAAAATGGTAAC
GGAGACCATCGATGAGGATGGCGATGTCGTGGAGGAAACCACCGAAGTTA
CCCGCAAAACGGTGAAGCGCACCATGAAGATCACTGAGACTTCTGCCACC
ACAAAGACAACCACGCTCACCACCCCCGCCAAACTGTATGGCAAGGATCT
GAGTGAGTACGATGATGTGGATGTGGAGAGCCTGCTGGCCCAGCTCTCCC
CCGAGGAGATAACCATACTGGCCAAAGAAGTGGATCCCGATGACAACTTC
CTGCCGCCAGACCAGCGCAATAGCTATGAGTGCACCAAGGAAGCCACCGG
GCCTCTCAATCGCAAGCAGCTGATCGAGCACATCAATAAGCAGGCCATCG
AGACCCCGGATCAGCCGGAGTTCGAGCCGTTCGTTCAGGGCAAGGTTCGT
GGAAAGAAGTGGGTCCCACCGCCAAGGGATGCCCGCGACATCGAGGCCGA
AGAACAAATCGCCATTGACATGGGCGAGGAGTACGAACACGCCCTTAACG
ATGCCACGCAGGAGGAGATCATCGATCTGGCCGCCATCCTCGGCTTCCAC
TCGATGATGAATCAGGACCAGTACCACGCCTCCTTGCTCAACAAGGGTCA
GCCCGTGGGCCTGGGATGGGATGGCATTACGAAATCCACTCAGCAGAAGC
TCTTCCCTATGGATCCGCCCAACAACACAGATGTGGAGGAATCCATCAAG
CGGGTCAAGGACGATGACTCCAAGCTGATTGACCTCAACTTGAACAACAT
TAAGAACATCTCGGACGAGAAACTCGAGCAACTGTTTGCCGCACTGCCTC
AGAACGAACATTTGGAAGTCCTCTCGCTAACAAATGTGGGCCTCACCGAC
AAGACAGCCCTCCTGTTAGCCGCGGCCATAGAGAAGAGCAAAACCCTGAG
AGTATTAAATGTCGAGACCAACTTTATCAGTCCGCCCGTGATTGTTAAGT
TGGTGCAAGCCCTGCTCAAGTGCCACACCATCGAGGAGTTTAGGGCCTCC
AATCAGCGGTCTGCGGTTCTGGGCAACAAGATCGAGATGGAAATCACCGA
CCTGGTGGAGAAGAACTCGTCGCTGCTGCGCCTTGGCTTGCACCTGGAGT
TCAACGACGCCCGCCACCGAGTGGCCGCTCACCTGCAGCGCAACATCGAC
AGAATCTTCCGCGTTCAGAAACTAAAGCCCAATCTACCCAAGTTGATCCT
GCCGGGCAACATGGAGATTGAGCGGGATCTGGTCGCCTATAACCGATCGG
CCACGCCTTCTCCGTCGCCATCTCCGCAGCCTCCAGTGGATTATGAAGTG
GAAGAGGACCCGGATAACATGGTTATCCGGGGTGGCGGCGATGCCTTCGA
TCCGGATGTCGATCCCGACAACATGGTGGTGCCGGGCAGTCGCTCCGTGA
CACCGAACTACGACGATGAGGGTGTCTATCAAGCGCACACGAATGCAAGC
TTTCTAGACCAT
BO33393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:30:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RG | 1581 | CG1539-PG | 1..1578 | 17..1594 | 7890 | 100 | Plus |
| tmod-RN | 1704 | CG1539-PN | 1..1574 | 17..1590 | 7870 | 100 | Plus |
| tmod-RI | 1320 | CG1539-PI | 1..1289 | 17..1305 | 6445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-RG | 3192 | CG1539-RG | 229..1806 | 17..1594 | 7890 | 100 | Plus |
| tmod-RN | 2699 | CG1539-RN | 337..1910 | 17..1590 | 7870 | 100 | Plus |
| tmod-RI | 3000 | CG1539-RI | 544..1832 | 17..1305 | 6445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:30:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30572023..30572535 | 392..904 | 2565 | 100 | Plus |
| 3R | 32079331 | 3R | 30574241..30574527 | 1305..1591 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 30572597..30572850 | 903..1156 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 30533286..30533507 | 17..238 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 30571807..30571962 | 237..392 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30572922..30573072 | 1154..1304 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:30:42 has no hits.
BO33393.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:51:21 Download gff for
BO33393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RG | 222..1799 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:46 Download gff for
BO33393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RG | 229..1806 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:44 Download gff for
BO33393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tmod-RG | 229..1806 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:44 Download gff for
BO33393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30571809..30571961 | 239..391 | 100 | -> | Plus |
| 3R | 30533286..30533507 | 17..238 | 100 | -> | Plus |
| 3R | 30572023..30572535 | 392..904 | 100 | -> | Plus |
| 3R | 30572599..30572850 | 905..1156 | 100 | -> | Plus |
| 3R | 30572925..30573072 | 1157..1304 | 100 | -> | Plus |
| 3R | 30574241..30574529 | 1305..1596 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:46 Download gff for
BO33393.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26398647..26398794 | 1157..1304 | 100 | -> | Plus |
| arm_3R | 26359008..26359229 | 17..238 | 100 | -> | Plus |
| arm_3R | 26397531..26397683 | 239..391 | 100 | -> | Plus |
| arm_3R | 26397745..26398257 | 392..904 | 100 | -> | Plus |
| arm_3R | 26398321..26398572 | 905..1156 | 100 | -> | Plus |
| arm_3R | 26399963..26400251 | 1305..1596 | 98 | | Plus |
BO33393.pep Sequence
Translation from 16 to 1612
> BO33393.pep
MSDIEDVFGGSAEETKPEPDAQSKTSVVTEHTEEVIPGETEKMVTETIDE
DGDVVEETTEVTRKTVKRTMKITETSATTKTTTLTTPAKLYGKDLSEYDD
VDVESLLAQLSPEEITILAKEVDPDDNFLPPDQRNSYECTKEATGPLNRK
QLIEHINKQAIETPDQPEFEPFVQGKVRGKKWVPPPRDARDIEAEEQIAI
DMGEEYEHALNDATQEEIIDLAAILGFHSMMNQDQYHASLLNKGQPVGLG
WDGITKSTQQKLFPMDPPNNTDVEESIKRVKDDDSKLIDLNLNNIKNISD
EKLEQLFAALPQNEHLEVLSLTNVGLTDKTALLLAAAIEKSKTLRVLNVE
TNFISPPVIVKLVQALLKCHTIEEFRASNQRSAVLGNKIEMEITDLVEKN
SSLLRLGLHLEFNDARHRVAAHLQRNIDRIFRVQKLKPNLPKLILPGNME
IERDLVAYNRSATPSPSPSPQPPVDYEVEEDPDNMVIRGGGDAFDPDVDP
DNMVVPGSRSVTPNYDDEGVYQAHTNASFLDH
BO33393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tmod-PG | 526 | CG1539-PG | 1..526 | 1..526 | 2704 | 100 | Plus |
| tmod-PN | 567 | CG1539-PN | 1..525 | 1..525 | 2698 | 100 | Plus |
| tmod-PM | 449 | CG1539-PM | 1..436 | 1..436 | 2192 | 98.9 | Plus |
| tmod-PI | 439 | CG1539-PI | 1..435 | 1..436 | 2191 | 99.3 | Plus |
| tmod-PL | 439 | CG1539-PL | 1..435 | 1..436 | 2191 | 99.3 | Plus |
