BO33396.complete Sequence
781 bp assembled on 2012-08-22
GenBank Submission: KX798450
> BO33396.complete
GAAGTTATCAGTCGACATGAAAACGGGCAGCAACAACAACCACATCTCCG
CCAGCAGCAGCAGCAGCAACAACAACAACAACAGCTCATTGGTGCAACAG
CAGCAGCAACGCTCCACCACTTCCGTTTCCGTCTCCTCGTCTCACATTGT
CACCGAGTGGGAGGATGGCATCATTTTCGATGTGGACGATCCCGACTTTT
GCAATCTGGCCACCGACAAGCTGAACTTCATAGTGCCATCAGCAGCCAAT
ATGTCGATCGCCAGTGTTCACGGTCCCCAAATCGCCGACATCTGCAGTCC
CCTGTCGCATCACAATCTCGGTCTGTCTGCCTCGCTGCCAGATCTGGTGG
GCAGTCCCCTGGAGATCAGCATGGACAACGTGCTGACCATTGAGGAGCTG
CGCCAGCACATGGGCTCCTGCTTCACCTGCGGCGTCTCCTGGACGGACGA
CCATGTGTCCCTCGACTGCAGCGAATGCGGTGGCTACAGCCTGGAGCGTC
CCTGTCCCCTGTGCGACGGCCAGTGCGGTGTCCAATGGAAACGTGATTTC
GCCATGTCCCATGCCTGCAGTCAAGCTCGCTGGGTGGGCGTGTGCATCAG
CTACCCGGAAGTCGTGGCCGGAGTCCAGTTGCCCGTGGGAGCAGGCGCTG
GAGCCGCCACCTCGTGTGCCGCTGCCGCTGCGAATCAACTGCGCCTGGCC
CAGGAGCTGTGCTCCCGCCTGGAACAGCTGTCCACGTCGACGGCGAGCAA
AAGCGGTCGCATCGCAAGCTTTCTAGACCAT
BO33396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:21:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RB | 750 | CG4710-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
| Pino-RC | 516 | CG4710-PC | 1..513 | 251..763 | 2565 | 100 | Plus |
| Pino-RA | 516 | CG4710-PA | 1..513 | 251..763 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:21:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RB | 1980 | CG4710-RB | 151..897 | 17..763 | 3735 | 100 | Plus |
| Pino-RC | 2130 | CG4710-RC | 518..1047 | 234..763 | 2650 | 100 | Plus |
| Pino-RA | 2079 | CG4710-RA | 467..996 | 234..763 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 556..307 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 1128129..1128345 | 233..17 | 1085 | 100 | Minus |
| 2L | 23513712 | 2L | 1115737..1115944 | 763..556 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 1117443..1117518 | 307..232 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:21:30 has no hits.
BO33396.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:15 Download gff for
BO33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..897 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:08 Download gff for
BO33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..897 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:33 Download gff for
BO33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 151..897 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:33 Download gff for
BO33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1115735..1115943 | 557..765 | 99 | <- | Minus |
| 2L | 1116441..1116690 | 307..556 | 100 | <- | Minus |
| 2L | 1117444..1117516 | 234..306 | 100 | <- | Minus |
| 2L | 1128129..1128345 | 17..233 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:08 Download gff for
BO33396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1115735..1115943 | 557..765 | 99 | <- | Minus |
| arm_2L | 1116441..1116690 | 307..556 | 100 | <- | Minus |
| arm_2L | 1117444..1117516 | 234..306 | 100 | <- | Minus |
| arm_2L | 1128129..1128345 | 17..233 | 100 | | Minus |
BO33396.pep Sequence
Translation from 16 to 781
> BO33396.pep
MKTGSNNNHISASSSSSNNNNNSSLVQQQQQRSTTSVSVSSSHIVTEWED
GIIFDVDDPDFCNLATDKLNFIVPSAANMSIASVHGPQIADICSPLSHHN
LGLSASLPDLVGSPLEISMDNVLTIEELRQHMGSCFTCGVSWTDDHVSLD
CSECGGYSLERPCPLCDGQCGVQWKRDFAMSHACSQARWVGVCISYPEVV
AGVQLPVGAGAGAATSCAAAAANQLRLAQELCSRLEQLSTSTASKSGRIA
SFLDH
BO33396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-PB | 249 | CG4710-PB | 1..249 | 1..249 | 1309 | 100 | Plus |
| Pino-PC | 171 | CG4710-PC | 1..171 | 79..249 | 911 | 100 | Plus |
| Pino-PA | 171 | CG4710-PA | 1..171 | 79..249 | 911 | 100 | Plus |
