BO33403.complete Sequence
2386 bp assembled on 2012-10-03
GenBank Submission: KX799656
> BO33403.complete
GAAGTTATCAGTCGACATGCCGCTCAATGCCCAGTTAAAGATTGCTCAAT
CAGTGAACAAAGTGACATACGCGAAAGTCAGTGACTCAAACTGTTGTGCT
AAAAAGCAACAAAAATACTCTATTGCCGACTTTAGCCAGGCCAAAAGGCA
GGCAGGCAGCATGTGTGCCACGGGGAAAGGTAAGCACAGGCTCTGTAGCC
TCAGTGCCCTGCTCCTCGTCCTGGTCGCCCAAACAGTGCACGTGGAATAC
GCCCGGGCGGATTATGAGAACACCTGGAATCTATATTACGAGCCGCCCTG
CTGCACGGGCTCATCTGCTGCCCATCATCTGCGCCACCACAAAGAACATG
TGCAGGACTTCAGTTGCGGGCCGCTGCACTACAAGACTTTCTACATGGAT
GAGCGCAACAATGCGCTATATGTGGGCGCCATGGATCGCATATTTCGGCT
CAATCTGCGCAACATCAGCCAATCGATTTGTGAGCGCGATGTCCTCATCC
TGGAGCCCACCGGATCGGATATCCTGAATTGTGTTTCCAAGGGTAAACGG
GAGGTGGAATGCCGAAATCACATAAGGGTTATCCAGCCGATGAACTTCAA
TGGCCAGAAGCTATATGTTTGCGGGACCAACGCCCACAATCCCAAGGATT
ACGTAATAAACGCAAACTTAACACATTTACCCAGATCCCAGTACGTGCCC
GGCATTGGCCTGGGCATTGGCAAGTGTCCCTACGATCCTGCTGACAACTC
AACCGCCGTCTATGTGGAGAACGGAAATCCCTTCGGCCTGCCCGCCCTGT
ACGCCGGCACAAATGCCGAGTTCACCAAAGCGGATTCCGTCATATTCCGC
TCGGACCTGTACAACCTGACGAATGGACGCAAGGAGGCCAACTTCAAGAG
AACCGTGAAGTACGACTCCAAGCTGCTGGACAAGCCCAACTTCGTCGGCT
CCTTTGAGATTGGTGAATTTGTGTACTTCTTCTTCCGCGAACATGCCGTT
GAGTACATAAATTGCGGAAAAGCCGTCTACTCCCGAGTGGCTCGGGTGTG
CAAAAACGACCGCGGTGGAAAATACATGATCAGCCAGAATTGGGCCACGT
ATCTGAAGGCGCGGATGAACTGCAGCATCTCCAGCGAATTTCCCTTCTAC
TTCAATGAGATACAATCCGTCTACAAGATGCCAACGGACGATACCAAGTT
CTATGCCACGTTCACAACGAATACGAATGGTCTGATTGGATCGGCAGTGT
GCAGCTACGACATCCGGGACATCAATGCGGCCTTCGACGGCAAATTCAAG
GAGCAGGCCACCTCGAACAGCGCCTGGCTGCCCGTTCTGAACTCCAAAGT
GCCGGAGCCACGTCCTGGCACTTGCCACAACGACACCGCCACGCTGCCGG
ACTCCGTGCTGAATTTCATTCGCAAACATCCGCTAATGGACAAGGCGGTC
GATCATGAATTTGGCAATCCGGTCTTCTTCAAGCGGGACGTCATACTCAC
CAAGCTGGTGGTGGACAAGATACGGATCGACAAGCTGAACCAGGAGTTCC
TAGTGTACTTTGTGGCCACGACGTCTGGCCACATCTACAAGATAGTGCAG
TTCATGCACTATGGCCAGCGGCACTCGAACCTGGTGGACATATTCGAGGC
CTCGCCGCACAGCGAACCCATACGGGAGATGACCCTCAGCCATAAGACAG
GATCCCTGTACGTGGCCACCGATCACCAGGTGAAGCAGATCGACATTGCC
ATGTGCGCCCGCCGATACGACAGCTGCTTCCGCTGCGTCTCGGATCCCTA
CTGCGGCTGGGACAAGGACGTCAATGCCTGCCGTCCCTACCAGCTGGGTC
TGCTGCAGGATGTGGCCAACGAGACGTCCGGAATCTGCGACACCAGTGTG
CTGCGCAAGAAGGTCACCTCCTCCTATGGCCAAACACTGCACCTTTCCTG
CTTTGTCAAAATGCCGGAAGTGCTGCGGAAGAAGCAGACACGCTGGTACC
ATCACTCCACCGAAAAAGGACGCTATGAGGTGCGCTACACACCCACCAAA
TATATCGACACCAACGAGGGCGGTCTGGTCCTCCTGGCGGTGAACGAGGG
CGACGGCGGGCGGTACGACAGCTACTTGGACGGCACCCTGCTCTGCAGCT
ACGGCGTCACCGTGGACGCCCACAGATGCTCGCCGCCATCGCAGAAGCAG
GACTACCAGAAAATCTACTCGCATTGGTGCAACGAGTTCGAGAAATACAA
ATCGGCCATGAAGCAGTGGCAGGCCAAACAGGAGCAATGCGGCCTCAAGG
ACAAAACAGGACCAATCAGCAGCAATGGAAAGCATGTGAATGATGTGTTC
AGCAACGATGCTTTGGTCGCAAGCTTTCTAGACCAT
BO33403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RA | 2355 | CG33960-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
| Sema-2b-RC | 2355 | CG33960-PC | 1..2352 | 17..2368 | 11760 | 100 | Plus |
| Sema-2b-RD | 2475 | CG33960-PD | 1..2355 | 17..2368 | 11695 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-RA | 3718 | CG33960-RA | 172..2523 | 17..2368 | 11760 | 100 | Plus |
| Sema-2b-RC | 5034 | CG33960-RC | 493..2844 | 17..2368 | 11760 | 100 | Plus |
| Sema-2b-RD | 4174 | CG33960-RD | 493..2847 | 17..2368 | 11695 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16426495..16426998 | 1519..2022 | 2520 | 100 | Plus |
| 2R | 25286936 | 2R | 16424295..16424652 | 933..1290 | 1790 | 100 | Plus |
| 2R | 25286936 | 2R | 16399094..16399421 | 17..344 | 1640 | 100 | Plus |
| 2R | 25286936 | 2R | 16425740..16425970 | 1289..1519 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 16427757..16427910 | 2022..2175 | 770 | 100 | Plus |
| 2R | 25286936 | 2R | 16423451..16423588 | 662..799 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16424037..16424170 | 799..932 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 16428421..16428532 | 2173..2284 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16423015..16423125 | 552..662 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 16420279..16420369 | 343..433 | 455 | 100 | Plus |
| 2R | 25286936 | 2R | 16428727..16428812 | 2283..2368 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 16529364..16529680 | 938..1254 | 415 | 75.4 | Plus |
| 2R | 25286936 | 2R | 16422678..16422751 | 483..556 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 16530924..16531066 | 1717..1859 | 310 | 81.1 | Plus |
| 2R | 25286936 | 2R | 16421677..16421732 | 429..484 | 265 | 98.2 | Plus |
| 2R | 25286936 | 2R | 16531819..16531881 | 2201..2263 | 210 | 88.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:33:30 has no hits.
BO33403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 11:23:18 Download gff for
BO33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33960-RA | 469..2820 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:17 Download gff for
BO33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RC | 493..2844 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:49 Download gff for
BO33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2b-RC | 493..2844 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:49 Download gff for
BO33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16423451..16423588 | 662..799 | 100 | -> | Plus |
| 2R | 16424038..16424170 | 800..932 | 100 | -> | Plus |
| 2R | 16399094..16399421 | 17..344 | 100 | -> | Plus |
| 2R | 16420281..16420368 | 345..432 | 100 | -> | Plus |
| 2R | 16421681..16421732 | 433..484 | 100 | -> | Plus |
| 2R | 16422680..16422748 | 485..553 | 100 | -> | Plus |
| 2R | 16423017..16423124 | 554..661 | 100 | -> | Plus |
| 2R | 16424295..16424651 | 933..1289 | 100 | -> | Plus |
| 2R | 16425741..16425969 | 1290..1518 | 100 | -> | Plus |
| 2R | 16426495..16426998 | 1519..2022 | 100 | -> | Plus |
| 2R | 16427758..16427910 | 2023..2175 | 100 | -> | Plus |
| 2R | 16428424..16428532 | 2176..2284 | 100 | -> | Plus |
| 2R | 16428729..16428812 | 2285..2370 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:17 Download gff for
BO33403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12307786..12307873 | 345..432 | 100 | -> | Plus |
| arm_2R | 12309186..12309237 | 433..484 | 100 | -> | Plus |
| arm_2R | 12310185..12310253 | 485..553 | 100 | -> | Plus |
| arm_2R | 12310522..12310629 | 554..661 | 100 | -> | Plus |
| arm_2R | 12310956..12311093 | 662..799 | 100 | -> | Plus |
| arm_2R | 12311543..12311675 | 800..932 | 100 | -> | Plus |
| arm_2R | 12286599..12286926 | 17..344 | 100 | -> | Plus |
| arm_2R | 12311800..12312156 | 933..1289 | 100 | -> | Plus |
| arm_2R | 12313246..12313474 | 1290..1518 | 100 | -> | Plus |
| arm_2R | 12314000..12314503 | 1519..2022 | 100 | -> | Plus |
| arm_2R | 12315263..12315415 | 2023..2175 | 100 | -> | Plus |
| arm_2R | 12315929..12316037 | 2176..2284 | 100 | -> | Plus |
| arm_2R | 12316234..12316317 | 2285..2370 | 97 | | Plus |
BO33403.pep Sequence
Translation from 16 to 2386
> BO33403.pep
MPLNAQLKIAQSVNKVTYAKVSDSNCCAKKQQKYSIADFSQAKRQAGSMC
ATGKGKHRLCSLSALLLVLVAQTVHVEYARADYENTWNLYYEPPCCTGSS
AAHHLRHHKEHVQDFSCGPLHYKTFYMDERNNALYVGAMDRIFRLNLRNI
SQSICERDVLILEPTGSDILNCVSKGKREVECRNHIRVIQPMNFNGQKLY
VCGTNAHNPKDYVINANLTHLPRSQYVPGIGLGIGKCPYDPADNSTAVYV
ENGNPFGLPALYAGTNAEFTKADSVIFRSDLYNLTNGRKEANFKRTVKYD
SKLLDKPNFVGSFEIGEFVYFFFREHAVEYINCGKAVYSRVARVCKNDRG
GKYMISQNWATYLKARMNCSISSEFPFYFNEIQSVYKMPTDDTKFYATFT
TNTNGLIGSAVCSYDIRDINAAFDGKFKEQATSNSAWLPVLNSKVPEPRP
GTCHNDTATLPDSVLNFIRKHPLMDKAVDHEFGNPVFFKRDVILTKLVVD
KIRIDKLNQEFLVYFVATTSGHIYKIVQFMHYGQRHSNLVDIFEASPHSE
PIREMTLSHKTGSLYVATDHQVKQIDIAMCARRYDSCFRCVSDPYCGWDK
DVNACRPYQLGLLQDVANETSGICDTSVLRKKVTSSYGQTLHLSCFVKMP
EVLRKKQTRWYHHSTEKGRYEVRYTPTKYIDTNEGGLVLLAVNEGDGGRY
DSYLDGTLLCSYGVTVDAHRCSPPSQKQDYQKIYSHWCNEFEKYKSAMKQ
WQAKQEQCGLKDKTGPISSNGKHVNDVFSNDALVASFLDH
BO33403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2b-PA | 784 | CG33960-PA | 1..784 | 1..784 | 4227 | 100 | Plus |
| Sema-2b-PC | 784 | CG33960-PC | 1..784 | 1..784 | 4227 | 100 | Plus |
| Sema-2b-PD | 824 | CG33960-PD | 1..785 | 1..784 | 4215 | 99.9 | Plus |
| Sema-2b-PB | 785 | CG33960-PB | 1..785 | 1..784 | 4215 | 99.9 | Plus |
| Sema-2a-PE | 724 | CG4700-PE | 3..719 | 59..778 | 2717 | 67.4 | Plus |
