BO33406.complete Sequence
1504 bp assembled on 2012-08-22
GenBank Submission: KX797576
> BO33406.complete
GAAGTTATCAGTCGACATGGCGGACGTGAGCGATCCCAGCGAACTGTTCG
ACCTGGAGCTGCACGACCTGGAACTGCAGGACGACAAGGCCAGGGACTCC
GACGACGACAGGATCGAGCTGGACGATGTTGACCTAGAACCGGAATTGTG
TATTAATCTGCACCAAGACACTGAGGGCCAGGAGACCATACAGCTCTGCG
AGGAGAATGTTAATCCAGGTAAAATCAAGCTGGGACCCAAGGACTTTGAG
CTCAAGAAGGTCCTTGGCAAAGGTGGTTATGGCAAAGTATTTCAGGTGCG
CAAGACCGCTGGACGAGATGCTAACAAATATTTTGCCATGAAGGTGCTCA
AAAAGGCATCCATTGTGACCAATCAAAAGGACACAGCGCACACCCGCGCC
GAGCGCAATATACTCGAGGCAGTCAAGCATCCCTTCATAGTGGAGCTAGT
TTATGCCTTCCAGACAGACGGAAAACTATACCTTATACTTGAATATCTCA
GCGGTGGAGAGCTGTTCATGCATTTGGAGCGTGAGGGCATCTTCTTAGAG
GATACCACATGCTTCTATTTAAGCGAAATCATTTTGGCCTTGGGCCATCT
ACACAAACTGGGCATCATCTACCGCGATCTGAAGCCCGAGAACATACTGC
TCGATGCACAGGGACACGTGAAGCTCACGGACTTCGGACTGTGCAAGGAG
CACATACAAGAGGGTATTGTCACCCACACCTTCTGCGGCACAATTGAGTA
CATGGCACCTGAAATTTTGACCAGAAGTGGCCATGGCAAAGCAGTCGACT
GGTGGTCACTGGGCGCTCTCATGTTTGACATGCTCACAGGAGTCCCACCC
TTCACCGCCGAGAATCGCAAGAAGACCATCGAGACCATTCTGAAAGCCAA
GCTCAATCTGCCAGCCTACCTCACACCGGAAGCCAGGGATCTGGTGCGTC
GCCTGATGAAGCGGCAGGAACCTCAGCGCCTTGGCAGCGGACCCGAGGAT
GCGGCGGCTGTTCAAATACACCCATTCTTCAAACACGTCAACTGGGACGA
TGTGCTCGCCAGACGCCTCGAGCCGCCTATAAAACCGCTCTTGAGAAGCG
AGGATGATGTCTCACAGTTCGATACAAGATTCACAAGACAAATTCCAGTG
GATTCACCTGATGATACAACGCTAAGCGAAAGTGCCAATTTAATTTTCCA
AGGTTTCACCTACGTTGCACCCTCGATACTGGAGGACATGCATCGGGCCA
ACCGGATGCCAGCACGCTCCCCACGACGCACTCCCCGCCAGCTGCCGGAC
AGCAGCTTCCGCCTGCAGTTCCCATCGGCCAATGTGGGCGCCAATGCGCC
GCTGGCCATGCACGGTCATTCGCAGCGATCCGGGATGTTTGCACGGGCCA
CGCCGCCGCATCACATGCAGACATTTGCGCCGCGTCCATCGCCGGCGCAG
GACGAGATGATGGACGTGCAGGGTCTGCCGATGGTCGCAAGCTTTCTAGA
CCAT
BO33406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:22:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S6k-RB | 1473 | CG10539-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
| S6k-RA | 1473 | CG10539-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S6k-RB | 4885 | CG10539-RB | 532..2001 | 17..1486 | 7350 | 100 | Plus |
| S6k-RA | 3486 | CG10539-RA | 532..2001 | 17..1486 | 7350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:22:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5800433..5800717 | 1486..1202 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 5806007..5806255 | 1093..845 | 1245 | 100 | Minus |
| 3L | 28110227 | 3L | 5806492..5806685 | 754..561 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 5806945..5807084 | 427..288 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 5806747..5806882 | 561..426 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 5807132..5807260 | 297..169 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 5810288..5810400 | 129..17 | 565 | 100 | Minus |
| 3L | 28110227 | 3L | 5805827..5805936 | 1202..1093 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 5806315..5806405 | 844..754 | 455 | 100 | Minus |
| 3L | 28110227 | 3L | 5807948..5807988 | 168..128 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:22:53 has no hits.
BO33406.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:17 Download gff for
BO33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 558..2027 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:15 Download gff for
BO33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 532..2001 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:58 Download gff for
BO33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S6k-RA | 532..2001 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:58 Download gff for
BO33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5810290..5810400 | 17..127 | 100 | | Minus |
| 3L | 5800431..5800717 | 1202..1488 | 99 | <- | Minus |
| 3L | 5805828..5805935 | 1094..1201 | 100 | <- | Minus |
| 3L | 5806007..5806255 | 845..1093 | 100 | <- | Minus |
| 3L | 5806315..5806405 | 754..844 | 100 | <- | Minus |
| 3L | 5806493..5806684 | 562..753 | 100 | <- | Minus |
| 3L | 5806747..5806880 | 428..561 | 100 | <- | Minus |
| 3L | 5806945..5807076 | 296..427 | 100 | <- | Minus |
| 3L | 5807134..5807260 | 169..295 | 100 | <- | Minus |
| 3L | 5807948..5807988 | 128..168 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:15 Download gff for
BO33406.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5799107..5799355 | 845..1093 | 100 | <- | Minus |
| arm_3L | 5799415..5799505 | 754..844 | 100 | <- | Minus |
| arm_3L | 5799593..5799784 | 562..753 | 100 | <- | Minus |
| arm_3L | 5799847..5799980 | 428..561 | 100 | <- | Minus |
| arm_3L | 5800045..5800176 | 296..427 | 100 | <- | Minus |
| arm_3L | 5800234..5800360 | 169..295 | 100 | <- | Minus |
| arm_3L | 5801048..5801088 | 128..168 | 100 | <- | Minus |
| arm_3L | 5803390..5803500 | 17..127 | 100 | | Minus |
| arm_3L | 5793531..5793817 | 1202..1488 | 99 | <- | Minus |
| arm_3L | 5798928..5799035 | 1094..1201 | 100 | <- | Minus |
BO33406.pep Sequence
Translation from 16 to 1504
> BO33406.pep
MADVSDPSELFDLELHDLELQDDKARDSDDDRIELDDVDLEPELCINLHQ
DTEGQETIQLCEENVNPGKIKLGPKDFELKKVLGKGGYGKVFQVRKTAGR
DANKYFAMKVLKKASIVTNQKDTAHTRAERNILEAVKHPFIVELVYAFQT
DGKLYLILEYLSGGELFMHLEREGIFLEDTTCFYLSEIILALGHLHKLGI
IYRDLKPENILLDAQGHVKLTDFGLCKEHIQEGIVTHTFCGTIEYMAPEI
LTRSGHGKAVDWWSLGALMFDMLTGVPPFTAENRKKTIETILKAKLNLPA
YLTPEARDLVRRLMKRQEPQRLGSGPEDAAAVQIHPFFKHVNWDDVLARR
LEPPIKPLLRSEDDVSQFDTRFTRQIPVDSPDDTTLSESANLIFQGFTYV
APSILEDMHRANRMPARSPRRTPRQLPDSSFRLQFPSANVGANAPLAMHG
HSQRSGMFARATPPHHMQTFAPRPSPAQDEMMDVQGLPMVASFLDH
BO33406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S6k-PB | 490 | CG10539-PB | 1..490 | 1..490 | 2568 | 100 | Plus |
| S6k-PA | 490 | CG10539-PA | 1..490 | 1..490 | 2568 | 100 | Plus |
| S6kII-PB | 911 | CG17596-PB | 184..557 | 62..427 | 871 | 48.2 | Plus |
| S6kII-PA | 911 | CG17596-PA | 184..557 | 62..427 | 871 | 48.2 | Plus |
| JIL-1-PC | 1207 | CG6297-PC | 260..602 | 76..412 | 785 | 45.8 | Plus |
| S6kII-PB | 911 | CG17596-PB | 567..786 | 76..293 | 280 | 32.6 | Plus |
| S6kII-PA | 911 | CG17596-PA | 567..786 | 76..293 | 280 | 32.6 | Plus |
