BO33419.complete Sequence
1120 bp assembled on 2012-08-22
GenBank Submission: KX797496
> BO33419.complete
GAAGTTATCAGTCGACATGAAGGAGTTCTGCCGCACCTGCGGCAAGACCG
TCGTGGCCGATGAATGCCTTCAGATCTTCACGCCTGCGGGCCGAAAGTTG
CTGCAGTGCGTCCGTTCCATCACAAATTGCTGGCTGCAGAATGTCCAGGA
TTTGCCCAATCACATATGTACGGACTGCCAGGTGCTGCTCAGCCAGGTGC
AAAAGTTCCGGCGGCGTTGTGCCAAGATCGAGAAGTACTTCGCCAGGCGG
CGGAGGAGAATGAATCTCGGCGAGGCTCCAGCGGCCATGGAGCAACTTCG
CGTCCAGCAGGCAGCTGCTCCGGATCCGCTGGGCATTGACGAGCTGATGT
CGGCCAGTGACATCAAAATAGAACCCATCCAGTTGCAAATGGAAGAGGAC
CCACAAGCGCCGTATCCCGAAAATCAGCTTGAACAAGCTCTTAGCTATGG
CAATGCACCGGGTGAGGACATCCTACCCCTTCCCGAGGACTATGGAGAGG
CACAGACTGAAGTGGCGACCACTACCAACGAGCCAGCACAGCGAAGAAGC
AAGAACACGGCCAAAATAAAGTCCAAGAAGCACACAATGCGCGTGGGCCG
AAAGCTGATCCATGTAAAAGTCATCGATGATAAGCAGCCAAAGCGTATTG
TGGACCGCAATGGACCCAGCGCCAAGCCCTGCATCTGCGAGCACTGCGGC
CGGCAATTCAAAGACACCAGCAATCTCCATGTCCATCTGCTGCGGCACAC
GGGCACCAAGCCGTTCGAGTGCGACCAGTGCCACCAGAAGTGCTACACGC
TCCACCTGCTGCGGCGCCACCAGCTGAAGCACACGGAGGGTCCCTACGCC
TGCACCTTCTGCGGCCTGGAGTACAGCACGAACAGCTCGCGCGTGAGACA
TGAAAGGGAGGCCTGCAAGAAGGGACGAGCGCCGCAATCCAAGTGGGAGA
TCATCAAGAAGGGCGAGCGCACTTTCCACTGCGAGGTGTGCGATCTCTGG
TTCCTGCGCGCCGGCAACTTTACTCAGCACATCAACTCTTCCAGTCACAT
CGAAAACGAACGAAGAAAGAAAAGAAAATCAAATCCAACCGCCATTAATT
CAGCAAGCTTTCTAGACCAT
BO33419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4820-RB | 1089 | CG4820-PB | 1..1086 | 17..1102 | 5430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4820-RB | 1187 | CG4820-RB | 79..1164 | 17..1102 | 5430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11216792..11217566 | 133..907 | 3875 | 100 | Plus |
| 3R | 32079331 | 3R | 11217752..11217875 | 979..1102 | 620 | 100 | Plus |
| 3R | 32079331 | 3R | 11216613..11216729 | 17..133 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 11217622..11217695 | 905..978 | 370 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frogger | 2483 | frogger FROGGER 2483bp | 1205..1251 | 591..544 | 111 | 72.9 | Minus |
BO33419.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:18 Download gff for
BO33419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 3..1088 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:20 Download gff for
BO33419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 79..1164 | 17..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:08 Download gff for
BO33419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4820-RB | 79..1164 | 17..1104 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:08 Download gff for
BO33419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11216613..11216729 | 17..133 | 100 | -> | Plus |
| 3R | 11216793..11217565 | 134..906 | 100 | -> | Plus |
| 3R | 11217624..11217695 | 907..978 | 100 | -> | Plus |
| 3R | 11217752..11217875 | 979..1104 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:20 Download gff for
BO33419.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7043474..7043597 | 979..1104 | 98 | | Plus |
| arm_3R | 7042335..7042451 | 17..133 | 100 | -> | Plus |
| arm_3R | 7042515..7043287 | 134..906 | 100 | -> | Plus |
| arm_3R | 7043346..7043417 | 907..978 | 100 | -> | Plus |
BO33419.pep Sequence
Translation from 16 to 1120
> BO33419.pep
MKEFCRTCGKTVVADECLQIFTPAGRKLLQCVRSITNCWLQNVQDLPNHI
CTDCQVLLSQVQKFRRRCAKIEKYFARRRRRMNLGEAPAAMEQLRVQQAA
APDPLGIDELMSASDIKIEPIQLQMEEDPQAPYPENQLEQALSYGNAPGE
DILPLPEDYGEAQTEVATTTNEPAQRRSKNTAKIKSKKHTMRVGRKLIHV
KVIDDKQPKRIVDRNGPSAKPCICEHCGRQFKDTSNLHVHLLRHTGTKPF
ECDQCHQKCYTLHLLRRHQLKHTEGPYACTFCGLEYSTNSSRVRHEREAC
KKGRAPQSKWEIIKKGERTFHCEVCDLWFLRAGNFTQHINSSSHIENERR
KKRKSNPTAINSASFLDH
BO33419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4820-PB | 362 | CG4820-PB | 1..362 | 1..362 | 1957 | 100 | Plus |
| CG31441-PA | 341 | CG31441-PA | 4..331 | 1..344 | 385 | 27.1 | Plus |
| CG18764-PA | 409 | CG18764-PA | 5..395 | 5..344 | 380 | 28.1 | Plus |
| ranshi-PA | 346 | CG9793-PA | 6..338 | 5..350 | 330 | 28.1 | Plus |
| CG1792-PA | 372 | CG1792-PA | 6..350 | 5..361 | 330 | 28.4 | Plus |
