Clone BO33445 Report

Search the DGRC for BO33445

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:334
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptdao-RA
Protein status:BO33445.pep: Imported from assembly
Sequenced Size:2680

Clone Sequence Records

BO33445.complete Sequence

2680 bp assembled on 2012-10-15

GenBank Submission: KX798770

> BO33445.complete
GAAGTTATCAGTCGACATGGCCTCCTCCACATCCTCTGCGCGTGGGAACA
ACAAAGCAGCCACCACCAACACCACCGCAGCCACCGCTCCCGTCTCCACC
GCCTCGTCGGCTGCCGTTTCCGGTTCCGGTGCCACCTCCGCGGCAGCTAC
TGCCTCCGCTCCGCCAGCTGTGACCCTAAGCGAGCTGATTGGCCAGCAGC
TGAAGCACCTGAACGCCGATGAGCTGCTGCACAAGGACGAGCTGCAGCTG
CTCCTGCTCATAACGCCTGTGCAACGCCAGAAACTGAGCCGCAATCTGGA
GGATGGCGATCTGGAGGCCAGCACCTCGGCGGCGCCACTTTCGCGTCCCG
AAAACGGCGAGGAGGATGACGACCTGATTGGGGCGGTGGGCGGACTCGGT
ATTTCGTCCCCAACTACGACCAAGGAGCCGGTGCTAGATTTTAGGCCACA
CGTACTCAAATGGTTTCAACATCTGCGCCACCAAACGGGCCACTTCAAGT
CGGAGGAGGAGTCTCGTCGTCTGCGGGAGGCTGGTAACGATTCGTATCGC
AAGGAGCGGCATCCGCTCAAGGCCAGCGATCTATTCACGGAGGCCATATT
CCTGGCCCCCGCCCGGAACACGCTAGCAGCCGCCCTGGCCCACGCCAATC
GCTCCCTGGTTCTCTTTGATTGCGGTCTATATGCGGAATCCTACGACGAC
TGCCTGTGCGCCCTGGATCTGGGCTATCCGGAGGAGTACTTGCCATTGAT
TAAGCTGCGCCAAGCCGCCTGTGCCTTAAAACTGCGTAACTTTGCGCTCT
GCGAGGAGCATCTGCACGAGCTCCTGCACATTGAACTGAACCAGGTGTTC
GAAGCGAGGACCCATGAGCTCTGGCATCAGTGCGAAGTGCTCAAGGTGGA
GCGCTTCGAGATGGCCGTACAGACGGGCGATGATCTGGATATCAACGATT
CGAAAGCCTTTGAAATAGCCTGGTTGGACAACTCCTCGTCGCTGCACACA
ACCAGGGCGGTGGCCAAGAACGCGCTCATCTTCGAATCGGAAGCGGTGGC
CATGGTGCCGAGCGGCAATTGCCGAGTGTGTGACTACTGCGGGATCACAC
AGTTCATTCCCTTTCCCTGCATTTACTGCTCCAACCGTCTGGTGGTCTAT
TGTTCCCGACAGTGCCGCTTCAAGCATGCGGCGATCCATGCAGTGGAGTG
CTTCGGCCACCAGATCGAGCTGTTCGAGTCCTTTGGCGAGGTTTTCGGAA
TGCCGCGACTCCTGCAGCTGGCCTTCAGGATGCTGATCACAGGACTGCCG
GAACTTTTGGGCCATTGCCGAAAGAAACCGACGCTCAGCAAGCTTTGGTC
GGCCATCAATGGGGGATTGCAGGAGCGACAGGATATCGCTTACAGTGCAG
TGCTGCGATTGGAGCGCCTGAAGGAGGAGCGACCCACGGACACGGTGATC
GCATTGGCATTGGCCGCCCACATCCTGTCCATTTACCTGAGCAAGTGCAC
TACGTTTTTTGATCAGCTGGAGAAGAGTCTGCCTACGGCCTCTCGGATGT
CGAGTGCCGAATGGGAGCTGCTGTGTGCCGCTCTACTCATGCGTCACATT
GGCCAGCTGCGCCACAGATCGCTCACTGCCTGCCGATCCTTCGTCCTGCC
AGCTGATCCGCACGTCTTCTCGCCACTCAACGAATTCCAGCTATGGGCCG
CACCCATGCGCCTGCAGGAGGGCCATCTGCATCTGCTGGCCGGCGAGGTG
GCTGTCGTGTCGTACTCCGTCTACCCGGATACCCTGAACTTGTGCCGCCA
CAGTTGTTCCTCCACGATCTGCGCCAAGTTCTCCGGCCGCACGGTGACCG
CGCTGGCCCTTTTGGATCTGCCGGCAGGCTCCGGCATCTACAACTGCTTC
GCCGGAGGTAACTTTCAGCAATTGCCCCGGGAGGAGCGCACCAAACAGCT
CCTGGAGAGCGGCATAAGGTGCCACTGCAACGCCTGCCAGTTAACGCACT
CGGATGATCAGTTCCATAAGTTTCATCGCTACCGTTGTGATAACCCAAAC
TGTATGGAGATCTTCACACCCAACGCCCTGCCCCATGCTCCAAGTCTGCG
TTGGTGGCTATCCGAGGAGTACACCCAGCCGGAGTTCAATGGCGCCGACC
TGATCATGTGTCCACATTGCGGCGAGTACCAGAAACTGGAGTGGTTCTGG
GCCTTCACCACGTCGCTCATCGATTGCGAACTCATCGAGGAGAGGTGCAA
ACTGTACGCGGCCATCGAGCGCGCCGAGAACCAACTGATGGATCTGCACG
AGTGCAAGGTGGCTCTGGCCAGGCTGCTTCTGGAGCAGTGCCTCATGGTG
CACCGCGAGGGGGCCACAGTCCTGGACGATTGGGAGTTCAACAAACTGGG
CTCCATCCTCAGATCCGTGCTGCCCAGCGTGATGGCCCAGTATGGCGGAC
AGTCAATCGAGTACGTGAAGTACTTCTCCTACTTCTGGGATGTGATGGCG
CTGAGCAACTACAAGTGCAACGATCGGGAGCTGATGCAAATGCTAAATGC
TTTGGAGTTCATAGCCGACGAGTTCAAGGATATATTCATCAACTACTACG
AGGATTATATTGCGCCCAAATTTGCTGAAGAGTCCTATGGCAGTGTCGTA
GATACGCAAGTTGCAAGCTTTCTAGACCAT

BO33445.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
dao-RB 2649 CG15267-PB 1..2646 17..2662 13230 100 Plus
dao-RA 2649 CG15267-PA 1..2646 17..2662 13230 100 Plus
dao-RC 2427 CG15267-PC 1..2341 17..2357 11705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
dao-RB 4083 CG15267-RB 261..2906 17..2662 13230 100 Plus
dao-RA 2975 CG15267-RA 261..2906 17..2662 13230 100 Plus
dao-RC 2977 CG15267-RC 261..2601 17..2357 11705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15251343..15252390 967..2014 5240 100 Plus
2L 23513712 2L 15249139..15249567 17..445 2145 100 Plus
2L 23513712 2L 15252452..15252794 2015..2357 1715 100 Plus
2L 23513712 2L 15253233..15253538 2357..2662 1530 100 Plus
2L 23513712 2L 15251006..15251287 685..966 1410 100 Plus
2L 23513712 2L 15250646..15250889 443..686 1220 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:49:12 has no hits.

BO33445.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:19 Download gff for BO33445.complete
Subject Subject Range Query Range Percent Splice Strand
dao-RA 255..2900 17..2664 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:20 Download gff for BO33445.complete
Subject Subject Range Query Range Percent Splice Strand
dao-RA 261..2906 17..2664 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:31 Download gff for BO33445.complete
Subject Subject Range Query Range Percent Splice Strand
dao-RA 261..2906 17..2664 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:31 Download gff for BO33445.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15251007..15251287 686..966 100 -> Plus
2L 15249139..15249566 17..444 100 -> Plus
2L 15250648..15250888 445..685 100 -> Plus
2L 15251343..15252390 967..2014 100 -> Plus
2L 15252452..15252794 2015..2357 100 -> Plus
2L 15253234..15253538 2358..2664 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:20 Download gff for BO33445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15251007..15251287 686..966 100 -> Plus
arm_2L 15249139..15249566 17..444 100 -> Plus
arm_2L 15250648..15250888 445..685 100 -> Plus
arm_2L 15251343..15252390 967..2014 100 -> Plus
arm_2L 15252452..15252794 2015..2357 100 -> Plus
arm_2L 15253234..15253538 2358..2664 99   Plus

BO33445.pep Sequence

Translation from 16 to 2680

> BO33445.pep
MASSTSSARGNNKAATTNTTAATAPVSTASSAAVSGSGATSAAATASAPP
AVTLSELIGQQLKHLNADELLHKDELQLLLLITPVQRQKLSRNLEDGDLE
ASTSAAPLSRPENGEEDDDLIGAVGGLGISSPTTTKEPVLDFRPHVLKWF
QHLRHQTGHFKSEEESRRLREAGNDSYRKERHPLKASDLFTEAIFLAPAR
NTLAAALAHANRSLVLFDCGLYAESYDDCLCALDLGYPEEYLPLIKLRQA
ACALKLRNFALCEEHLHELLHIELNQVFEARTHELWHQCEVLKVERFEMA
VQTGDDLDINDSKAFEIAWLDNSSSLHTTRAVAKNALIFESEAVAMVPSG
NCRVCDYCGITQFIPFPCIYCSNRLVVYCSRQCRFKHAAIHAVECFGHQI
ELFESFGEVFGMPRLLQLAFRMLITGLPELLGHCRKKPTLSKLWSAINGG
LQERQDIAYSAVLRLERLKEERPTDTVIALALAAHILSIYLSKCTTFFDQ
LEKSLPTASRMSSAEWELLCAALLMRHIGQLRHRSLTACRSFVLPADPHV
FSPLNEFQLWAAPMRLQEGHLHLLAGEVAVVSYSVYPDTLNLCRHSCSST
ICAKFSGRTVTALALLDLPAGSGIYNCFAGGNFQQLPREERTKQLLESGI
RCHCNACQLTHSDDQFHKFHRYRCDNPNCMEIFTPNALPHAPSLRWWLSE
EYTQPEFNGADLIMCPHCGEYQKLEWFWAFTTSLIDCELIEERCKLYAAI
ERAENQLMDLHECKVALARLLLEQCLMVHREGATVLDDWEFNKLGSILRS
VLPSVMAQYGGQSIEYVKYFSYFWDVMALSNYKCNDRELMQMLNALEFIA
DEFKDIFINYYEDYIAPKFAEESYGSVVDTQVASFLDH

BO33445.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
dao-PB 882 CG15267-PB 1..882 1..882 4648 100 Plus
dao-PA 882 CG15267-PA 1..882 1..882 4648 100 Plus
dao-PC 808 CG15267-PC 1..786 1..786 4115 99.4 Plus
CG1868-PC 751 CG1868-PC 42..749 142..865 868 31.3 Plus
CG1868-PB 751 CG1868-PB 42..749 142..865 868 31.3 Plus