BO33446.complete Sequence
2575 bp assembled on 2012-10-03
GenBank Submission: KX795948
> BO33446.complete
GAAGTTATCAGTCGACATGGACTTCAAGGAATACCGCCAAAGGGGCAAGG
AGATGGTCGACTATATTGCAGACTATTTGGAGAACATCCGGGAACGCCGA
GTTTTTCCGGATGTCAGTCCGGGCTATATGCGCCAGTTACTGCCGGAGTC
CGCTCCGATCGAAGGTGAACCGTGGCCGAAAATATTCTCGGATGTGGAGC
GAATCGTGATGCCGGGCATAACCCACTGGCAATCGCCCCACATGCACGCC
TACTTTCCGGCCCTCAACTCCATGCCTTCCCTACTGGGCGACATGCTGGC
GGATGCGATTAACTGCCTGGGATTCACCTGGGCGAGCTCGCCGGCCTGCA
CCGAGCTGGAGATCATAGTGATGAACTGGCTGGGCAAGATGATCGGTCTG
CCGGATGCCTTTCTCCACCTGAGCTCCCAAAGTCAGGGCGGTGGAGTGCT
GCAGACCACTGCCAGTGAAGCTACTCTAGTTTGTCTGCTGGCGGGACGGA
CTCGGGCTATTCAGCGATTCCATGAGCGACATCCTGGCTATCAGGATGCG
GAGATCAACGCCCGGCTGGTGGCCTACTGCTCCGATCAGGCGCACTCCAG
TGTGGAGAAGGCGGCGCTCATTGGACTCGTGAGGATGCGTTACATCGAGG
CGGATGATGACCTGGCGATGCGCGGCAAACTGTTGCGCGAGGCCATCGAG
GATGACATTAAGCAGGGCCTGGTCCCCTTCTGGGTCTGCGCCACACTCGG
GACCACCGGCAGCTGCAGCTTCGATAACCTGGAGGAGATTGGCATCGTTT
GTGCGGAGCACCACCTGTGGCTCCACGTGGACGCCGCGTACGCCGGCAGC
GCCTTCATCTGCCCGGAGTTTCGCACCTGGCTGCGTGGCATTGAGCGGGC
GGATTCGATAGCCTTCAATCCGTCAAAGTGGCTGATGGTGCACTTCGATG
CGACCGCATTGTGGGTACGGGATAGCACCGCCGTCCACAGGACCTTCAAT
GTGGAGCCGCTGTATCTGCAGCACGAGAATTCCGGAGTGGCAGTGGACTT
TATGCACTGGCAGATACCGCTGAGTCGCCGATTCCGTGCCCTGAAGGTGT
GGTTCGTCCTGCGATCCTACGGGATCAAAGGCCTACAGCGCCACATTCGC
GAAGGCGTTCGATTGGCTCAGAAATTCGAGGCCCTCGTTCTGGCCGATCA
TCGTTTCGAGCTGCCCGCTAAAAGGCATCTTGGCCTGGTGGTATTCCGGA
TACGCGGCGATAATGAGATCACCGAGAAGCTGCTGAAGAGGCTGAATCAC
CGAGGCAACCTTCATTGCATCCCATCGTCGCTGAAGGGACAGTATGTCAT
CCGGTTCACCATCACATCGACGCACACGACCTTGGACGATATTGTCAAGG
ATTGGATGGAGATCCGTCAGGTGGCCTCCACTGTGCTGGAGGAGATGAAC
ATCACAATTTCAAATCGCGTCTATCTCAAGGAAACCAAGGAGAAAAACGA
AGCCTTCGGCTCGAGTCTTCTGCTCTCTAATTCTCCGCTCTCGCCTAAGG
TGGTAAACGGCTCTTTTGCGGCCATATTCGATGCGGATGAGTTCCTGGCC
AAAACCTATGCCGGCGTCCGGATAGCGCACCAGGAATCGCCATCGATGAG
ACGACGTGTGCGTGGCATCCTCATGTCGGGCAAGCAGTTCTCTTTGGACT
CCCACATGGACGTGGTGGTTCAGACGACCCTGGACGCCGGCAATGGAGCC
ACTCGTACCAGCACCACCAACTCCTATGGCCACACCACTTCTGCGGCCCA
GGCAAACTCGGAGAGGCAAGCCAGCATCCAGGAGGACAACGAGGAGTCGC
CGGAAGAAACTGAATTGCTGTCACTGTGCAGGACCAGCAATGTACCCAGT
CCCGAGCACGCCCACTCCCTATCCACTCCTAGTCGCAGCTGTAGCTCCAG
CTCCCACTCACTGATCCACTCTCTCACTCAATCCTCGCCGCGATCCTCAC
CAGTCAACCAATTCCGACCCATTACTTTGTGCGCAGTGCCCAGTCAAAGC
CAACTTTCAATGCCCCTTGCCATGCCCCTGCCCAATCGCAATGTCACCGT
GTCCGTCGATAGCCTCCTGAACCCGGTCACCACCTGCAATGTCTACCATG
GCAAGCGGTTTCTGGAGCCCCTCGAGAATCTCGCCCAGACCAGTGCCTCC
TTCAGCAGCAGCATCTTTCGCCTGCCGACACCCATAGCCACGCCCACCCG
GGAATCGCCGGAGGATCCGGACTGGCCGGCAAAGACCTTCAGCCAGCTGC
TGCTGGAGCGCTACTCCTCGCAGTCCCAGTCCCTGGGCAATAACTCCTCG
ACGGAGAGCAGCAGTCTCAGCGGCGGGGCCACTCCCACGCCCACTCCCAT
GAGCAGCCTGGATGAATTGGTGACACCACTGCTGCTCTCATTCGCATCCC
CCTCGCAGCCGATGCTCTCCGCCCATGGCATTGGCGAGGGTCAGCGGGAG
CAGGGCAGCGACTCGGATGCCACCGTTTGTTCGACAACCTCATCGATGGA
GTCGCTTGCAAGCTTTCTAGACCAT
BO33446.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdc-RD | 2544 | CG3454-PD | 1..2541 | 17..2557 | 12705 | 100 | Plus |
| Hdc-RB | 2544 | CG3454-PB | 1..2541 | 17..2557 | 12705 | 100 | Plus |
| Hdc-RA | 2544 | CG3454-PA | 1..2541 | 17..2557 | 12705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdc-RD | 3733 | CG3454-RD | 691..3232 | 16..2557 | 12710 | 100 | Plus |
| Hdc-RB | 3300 | CG3454-RB | 258..2799 | 16..2557 | 12710 | 100 | Plus |
| Hdc-RA | 3270 | CG3454-RA | 228..2769 | 16..2557 | 12710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10244874..10245576 | 1855..2557 | 3515 | 100 | Plus |
| 2R | 25286936 | 2R | 10243152..10243847 | 786..1481 | 3480 | 100 | Plus |
| 2R | 25286936 | 2R | 10241670..10242250 | 44..624 | 2905 | 100 | Plus |
| 2R | 25286936 | 2R | 10244362..10244591 | 1627..1856 | 1150 | 100 | Plus |
| 2R | 25286936 | 2R | 10244162..10244308 | 1481..1627 | 735 | 100 | Plus |
| 2R | 25286936 | 2R | 10242470..10242582 | 623..735 | 565 | 100 | Plus |
| 2R | 25286936 | 2R | 10242742..10242796 | 733..787 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 6688052..6688212 | 405..245 | 205 | 75.2 | Minus |
Blast to na_te.dros performed 2014-11-28 12:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osvaldo | 1543 | Osvaldo OSV 1543bp | 1037..1077 | 773..733 | 124 | 78 | Minus |
BO33446.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 11:53:48 Download gff for
BO33446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdc-RA | 229..2769 | 17..2559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:20 Download gff for
BO33446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdc-RA | 229..2769 | 17..2559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:53 Download gff for
BO33446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hdc-RA | 229..2769 | 17..2559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:53 Download gff for
BO33446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10241097..10241124 | 17..44 | 100 | -> | Plus |
| 2R | 10241671..10242249 | 45..623 | 100 | -> | Plus |
| 2R | 10242471..10242580 | 624..733 | 100 | -> | Plus |
| 2R | 10242743..10242796 | 734..787 | 100 | -> | Plus |
| 2R | 10243154..10243847 | 788..1481 | 100 | -> | Plus |
| 2R | 10244163..10244308 | 1482..1627 | 100 | -> | Plus |
| 2R | 10244363..10244591 | 1628..1856 | 100 | -> | Plus |
| 2R | 10244876..10245576 | 1857..2559 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:20 Download gff for
BO33446.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6128602..6128629 | 17..44 | 100 | -> | Plus |
| arm_2R | 6129176..6129754 | 45..623 | 100 | -> | Plus |
| arm_2R | 6129976..6130085 | 624..733 | 100 | -> | Plus |
| arm_2R | 6130248..6130301 | 734..787 | 100 | -> | Plus |
| arm_2R | 6130659..6131352 | 788..1481 | 100 | -> | Plus |
| arm_2R | 6131668..6131813 | 1482..1627 | 100 | -> | Plus |
| arm_2R | 6131868..6132096 | 1628..1856 | 100 | -> | Plus |
| arm_2R | 6132381..6133081 | 1857..2559 | 99 | | Plus |
BO33446.pep Sequence
Translation from 16 to 2575
> BO33446.pep
MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEG
EPWPKIFSDVERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINC
LGFTWASSPACTELEIIVMNWLGKMIGLPDAFLHLSSQSQGGGVLQTTAS
EATLVCLLAGRTRAIQRFHERHPGYQDAEINARLVAYCSDQAHSSVEKAA
LIGLVRMRYIEADDDLAMRGKLLREAIEDDIKQGLVPFWVCATLGTTGSC
SFDNLEEIGIVCAEHHLWLHVDAAYAGSAFICPEFRTWLRGIERADSIAF
NPSKWLMVHFDATALWVRDSTAVHRTFNVEPLYLQHENSGVAVDFMHWQI
PLSRRFRALKVWFVLRSYGIKGLQRHIREGVRLAQKFEALVLADHRFELP
AKRHLGLVVFRIRGDNEITEKLLKRLNHRGNLHCIPSSLKGQYVIRFTIT
STHTTLDDIVKDWMEIRQVASTVLEEMNITISNRVYLKETKEKNEAFGSS
LLLSNSPLSPKVVNGSFAAIFDADEFLAKTYAGVRIAHQESPSMRRRVRG
ILMSGKQFSLDSHMDVVVQTTLDAGNGATRTSTTNSYGHTTSAAQANSER
QASIQEDNEESPEETELLSLCRTSNVPSPEHAHSLSTPSRSCSSSSHSLI
HSLTQSSPRSSPVNQFRPITLCAVPSQSQLSMPLAMPLPNRNVTVSVDSL
LNPVTTCNVYHGKRFLEPLENLAQTSASFSSSIFRLPTPIATPTRESPED
PDWPAKTFSQLLLERYSSQSQSLGNNSSTESSSLSGGATPTPTPMSSLDE
LVTPLLLSFASPSQPMLSAHGIGEGQREQGSDSDATVCSTTSSMESLASF
LDH
BO33446.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hdc-PD | 847 | CG3454-PD | 1..847 | 1..847 | 4392 | 100 | Plus |
| Hdc-PB | 847 | CG3454-PB | 1..847 | 1..847 | 4392 | 100 | Plus |
| Hdc-PA | 847 | CG3454-PA | 1..847 | 1..847 | 4392 | 100 | Plus |
| Hdc-PC | 619 | CG3454-PC | 1..613 | 1..613 | 3202 | 100 | Plus |
| Tdc2-PA | 637 | CG30446-PA | 1..477 | 1..476 | 1407 | 55.1 | Plus |
