BO33469.complete Sequence
2983 bp assembled on 2012-10-24
GenBank Submission: KX799579
> BO33469.complete
GAAGTTATCAGTCGACATGCCAGTCGTTAGTCAACAATATGGAAATGGCT
TTCGGCCATACAGCTCCTTTCGAGTGCCGCGCGGCAGTTGTGGCTACGGC
AACAACAACAGCGTTAGCAGCAGCAACAACAACCCCAGCAGCAACATGAG
CAACAGTGGCCAAAAAGGAGCAGCAGCTGCCCAACCCCTGAGCAGTAATG
GAGCCAACAGATCGATGGTGAAATCGATGCCGGGCAGAAACAACAACCCG
GCAGCTGGATCCTCCTCCACATCCGCAGCCTCGTCGACTTCCTCCATCCA
TCAGCAGGGTGTTGTGACGAGTGGCAATTTTGTACGCCAGCAGCCCTGGC
GGAGCAGTTACTGCAGCAGCAACCGCCACAAGTTGCAGCCCGAACAGCAT
CCCCACCATCAGCAGCAGAGACTGGTAAGCGGTGGCAGTGTGAAGCCACT
GACGCCTAAACTGATCCGTCGCATCGAGAGCACTTGCTCCACCGCAGCGC
CCACACGCCATTGCAAGGCGAGGGCGCCACTACCGTCCACTCAGGCTGCA
CGCCCGGTGACCACGCCCAGCACTGCCAGGAAACAGTATCAGCCAGCAGG
CTCCGTATCAGTATCATCACAGCAACCGATGGGAACCCCCACCAGCCAGA
AGCGCACGTATCAGGCGGGACGAATGGCAGCCAAGGAGAACTGCCCAGCT
CGCGTGGGTCAGCGCTCCACCAAGAACTATCCGGCACCGCAGCCACCGCT
GCCCCCGCGGAGGCAGGCTGCCACCAATGATCTCACCAATGCAGGAGGAG
CCGGAAAGGCCACTCCTCTGGCCCAGCGTCGCCAGCTGCCGGCCACGCCC
AAGCTGAGCATCAAGCAGCGCAGCAACGGGTGCACACACAATGGAGAGGG
AGCTGGCTCCTCGACGGGCTCCAGTGATTCGCACGACTCTCCGCGCCTCA
AGAAGGCCTTCTCGAATAAGTTTCCGCAGGGATTGCCCTTTGAGGAGGAG
TTTTACGGACGCAATCGCTCCTACTCGCAATCGTCCAGCAACTATAGTTT
CTACAGTTCCGTGGGTGCGCCCACAACGCCTCATGATGAAGACGATGTTG
GAGATATGGATGAAAAAGTCCATCGTGTTCACTGTGACGACGATGACGAG
TTCCAGCGCAAACCGTCCACTGATGAGTCTCTCTATGTGGACTTCTCGAA
ACTAGTGCAGACCCACCAGCAACGGCAGTACGTGCCTGCCAGCTCCTGGA
TAAGGGCCTCTCCAGATGAATGCGAATTGCTCCGAAGCAAGCAAACTAGT
CAGCTAACACCTGCCCAGCAGAGGAGGAAGAACAGCAAGTACGCACGCTC
AATGCACGAGTATCTGTACAGCGATGACCCTGGACAGGCCAGGATCAAGC
ATCGGTTGTCCGTGGTCGATGAGCCAGAGGATGGATACTACAGCTATGCG
GCTGGAACACCGGATCCGCTGCCCTCACCGCCGCCCACGCCCCGAACGGA
CATCTATGTGGCCGCTGCTTCGTGGGCACCCAAGCCGCTCTACCCCGACC
GCGTGCTGTTGCCACCAGCGGATGGCAACAACAATCACCAGAAGCAACAG
CCGCGTCGACGGTCCGAGCACTTGGGGTCCACGACGTGTGAGTATAATTT
CGATGACAGCATCTCAACCCGCCGACGCAAGGAGCGTTCGAAGCGTTCGC
ACCGCAAGTCGCCCGCCGCCAGTCGACGGCAGCACAAATACCGCTACAGG
GACGAGACGTCCCATTCGAGCTCCCGCCGGCGGCACCGTGATCGCGCCAA
GGACGAACGCGACAGCGGACGCAACAACCGCCAGTCGCAGGCTAAGACAG
CAAAGCCCGTCATTCAAGATGATGCTGATGGTCACTTAATTTACCACACC
GGAGACATTCTCCATCACAGATATAAGATCATGGCCACACTGGGCGAGGG
AACTTTTGGACGTGTGGTCAAGGTCAAAGATATGGAGCGTGATTACTGCA
TGGCTTTAAAGATTATTAAGAACGTGGAAAAGTACCGCGAAGCTGCCAAG
CTGGAAATAAATGCTTTGGAAAAGATTGCCCAAAAGGATCCGCATTGTGA
TCATTTGTGCGTCAAAATGATTGACTGGTTTGATTATCATGGACACATGT
GTATAGTTTTTGAAATGTTGGGGCTCAGTGTTTTCGATTTTTTGCGAGAG
AACAACTATGAGCCATACCCGCTGGACCAAGTGCGCCATATGGCCTATCA
ATTATGCTACTCTGTGAAATTTCTACATGACAATCGTTTAACGCACACAG
ATCTCAAGCCGGAGAACATACTCTTCGTCGACTCGGATTATACTTCTCAC
TATAATCATAAGATTAACCGCGAGGTGCGCCGCGTCAAGAATACGGACGT
TCGCCTAATCGACTTCGGGTCGGCCACCTTCGACCACGAGCACCACAGCA
CAATTGTCTCGACGCGACATTACCGCGCGCCAGAGGTCATACTGGAGCTG
GGGTGGTCACAGCCGTGTGACGTTTGGTCCATTGGGTGCATCTTGTTCGA
ACTGTATCTGGGAATCACGCTCTTCCAAACGCACGACAATCGCGAACACT
TGGCCATGATGGAGCGAATCTTGGGACAAATACCATATCGCATGGCACGC
AAAACCAAAACAAAGTACTTCTATCATGGTAAGTTAGATTGGGATGAGAA
GTCCAGTGCGGGTCGCTACGTCCGTGATCACTGCAAGCCGTTGTTCCTGT
GCCAGCTGAGCGACAGCGAGGACCACTGTGAGCTCTTCAGTCTGATCAAG
AAGATGCTGGAGTACGAGCCGTCGTCACGCATCACGTTAGGTGAGGCCCT
GCATCATCCGTTCTTTGATAGGCTGCCACCACACCATCGAGTAGGTGAGG
TCAGCAACAAGCAGCCCCTTTCGTCGGGCAGCAGCAGCCGCGAACGATCG
CATAGCCTCTCCAGAGCAAGCTTTCTAGACCAT
BO33469.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doa-RL | 2952 | CG42320-PL | 1..2949 | 17..2965 | 14745 | 100 | Plus |
| Doa-RV | 1536 | CG42320-PV | 216..1533 | 1648..2965 | 6590 | 100 | Plus |
| Doa-RU | 1743 | CG42320-PU | 423..1740 | 1648..2965 | 6590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doa-RL | 4312 | CG42320-RL | 331..3279 | 17..2965 | 14745 | 100 | Plus |
| Doa-RV | 2097 | CG42320-RV | 554..1871 | 1648..2965 | 6590 | 100 | Plus |
| Doa-RU | 2164 | CG42320-RU | 621..1938 | 1648..2965 | 6590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28893432..28895062 | 17..1647 | 8155 | 100 | Plus |
| 3R | 32079331 | 3R | 28900824..28901022 | 1648..1846 | 995 | 100 | Plus |
| 3R | 32079331 | 3R | 28921358..28921551 | 2649..2842 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 28920689..28920860 | 2194..2365 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 28920920..28921091 | 2366..2537 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 28921613..28921739 | 2839..2965 | 635 | 100 | Plus |
| 3R | 32079331 | 3R | 28920353..28920467 | 1989..2103 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 28921155..28921269 | 2535..2649 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 28920537..28920627 | 2104..2194 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 28919490..28919567 | 1845..1922 | 390 | 100 | Plus |
| 3R | 32079331 | 3R | 28920225..28920291 | 1923..1989 | 335 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:57:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6789..6860 | 353..422 | 139 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6916..7012 | 2825..2732 | 118 | 59.8 | Minus |
BO33469.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-24 12:37:04 Download gff for
BO33469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RL | 329..3277 | 17..2967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:48 Download gff for
BO33469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RL | 331..3279 | 17..2967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:17:49 Download gff for
BO33469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Doa-RL | 331..3279 | 17..2967 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:17:49 Download gff for
BO33469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28921359..28921549 | 2650..2840 | 100 | -> | Plus |
| 3R | 28921615..28921739 | 2841..2967 | 98 | | Plus |
| 3R | 28920920..28921089 | 2366..2535 | 100 | -> | Plus |
| 3R | 28921156..28921269 | 2536..2649 | 100 | -> | Plus |
| 3R | 28893432..28895062 | 17..1647 | 100 | -> | Plus |
| 3R | 28900824..28901022 | 1648..1846 | 100 | -> | Plus |
| 3R | 28919492..28919567 | 1847..1922 | 100 | -> | Plus |
| 3R | 28920225..28920291 | 1923..1989 | 100 | -> | Plus |
| 3R | 28920354..28920467 | 1990..2103 | 100 | -> | Plus |
| 3R | 28920537..28920627 | 2104..2194 | 100 | -> | Plus |
| 3R | 28920690..28920860 | 2195..2365 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:48 Download gff for
BO33469.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24746878..24746991 | 2536..2649 | 100 | -> | Plus |
| arm_3R | 24719154..24720784 | 17..1647 | 100 | -> | Plus |
| arm_3R | 24726546..24726744 | 1648..1846 | 100 | -> | Plus |
| arm_3R | 24745214..24745289 | 1847..1922 | 100 | -> | Plus |
| arm_3R | 24745947..24746013 | 1923..1989 | 100 | -> | Plus |
| arm_3R | 24746076..24746189 | 1990..2103 | 100 | -> | Plus |
| arm_3R | 24746259..24746349 | 2104..2194 | 100 | -> | Plus |
| arm_3R | 24746412..24746582 | 2195..2365 | 100 | -> | Plus |
| arm_3R | 24746642..24746811 | 2366..2535 | 100 | -> | Plus |
| arm_3R | 24747081..24747271 | 2650..2840 | 100 | -> | Plus |
| arm_3R | 24747337..24747461 | 2841..2967 | 98 | | Plus |
BO33469.pep Sequence
Translation from 16 to 2983
> BO33469.pep
MPVVSQQYGNGFRPYSSFRVPRGSCGYGNNNSVSSSNNNPSSNMSNSGQK
GAAAAQPLSSNGANRSMVKSMPGRNNNPAAGSSSTSAASSTSSIHQQGVV
TSGNFVRQQPWRSSYCSSNRHKLQPEQHPHHQQQRLVSGGSVKPLTPKLI
RRIESTCSTAAPTRHCKARAPLPSTQAARPVTTPSTARKQYQPAGSVSVS
SQQPMGTPTSQKRTYQAGRMAAKENCPARVGQRSTKNYPAPQPPLPPRRQ
AATNDLTNAGGAGKATPLAQRRQLPATPKLSIKQRSNGCTHNGEGAGSST
GSSDSHDSPRLKKAFSNKFPQGLPFEEEFYGRNRSYSQSSSNYSFYSSVG
APTTPHDEDDVGDMDEKVHRVHCDDDDEFQRKPSTDESLYVDFSKLVQTH
QQRQYVPASSWIRASPDECELLRSKQTSQLTPAQQRRKNSKYARSMHEYL
YSDDPGQARIKHRLSVVDEPEDGYYSYAAGTPDPLPSPPPTPRTDIYVAA
ASWAPKPLYPDRVLLPPADGNNNHQKQQPRRRSEHLGSTTCEYNFDDSIS
TRRRKERSKRSHRKSPAASRRQHKYRYRDETSHSSSRRRHRDRAKDERDS
GRNNRQSQAKTAKPVIQDDADGHLIYHTGDILHHRYKIMATLGEGTFGRV
VKVKDMERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVK
MIDWFDYHGHMCIVFEMLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSV
KFLHDNRLTHTDLKPENILFVDSDYTSHYNHKINREVRRVKNTDVRLIDF
GSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCILFELYLGI
TLFQTHDNREHLAMMERILGQIPYRMARKTKTKYFYHGKLDWDEKSSAGR
YVRDHCKPLFLCQLSDSEDHCELFSLIKKMLEYEPSSRITLGEALHHPFF
DRLPPHHRVGEVSNKQPLSSGSSSRERSHSLSRASFLDH
BO33469.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doa-PL | 983 | CG33553-PE | 1..983 | 1..983 | 5263 | 100 | Plus |
| Doa-PV | 511 | CG42320-PV | 40..511 | 516..983 | 2389 | 94.5 | Plus |
| Doa-PU | 580 | CG42320-PU | 109..580 | 516..983 | 2389 | 94.5 | Plus |
| Doa-PT | 580 | CG42320-PT | 109..580 | 516..983 | 2389 | 94.5 | Plus |
| Doa-PS | 511 | CG42320-PS | 40..511 | 516..983 | 2389 | 94.5 | Plus |
