BO33470.complete Sequence
4813 bp assembled on 2013-01-22
GenBank Submission: KX795843
> BO33470.complete
GAAGTTATCAGTCGACATGGGCACCATCTCATCCGTGCTGCAGTGGTCGT
GCACCAAATGTAACACTATCAATCCCACGGAGTCGCTCAAGTGCTTCAAT
TGCGGCACCGTCCGCAAGGTGTTCCCCCAACAACAGCAGCAGCAGCATCG
CAGCAGCAGCATCACCGCCTCCTGGACAGCTGATGATGCACTGGAGCAGG
AGCAGGCGGAGAAGGGGCAGGAGAGGGACAAGGAGAAGGGCAGGGCGGCG
GTTGCCAGGAGCGAGTACAAGCATGTGTACAAGTCCCTGCTGCGCGGATG
CTTGAAAAGACCACAGCGGAACAGCCAGAATCTGCCCGCCAACTGCGTGG
ATTGCGAGGACACGCGCAAGTACATCAAGAGCTCTATTGAGCTGTACCGC
CACTTCTCGAATCCGGCCCTGAATCGGCGGTGGGTGTGCCACGCCTGCGG
CACGGACAACAGCTCGGTCACCTGGCACTGCCTCATCTGCGACACGGTCA
GCTATCTGGCGCCCATTTACAAGGACGCCATCGCCGCCGACCGAGGCCAG
GATCTGGCTGGCAGCCTGGGCAATCGCGGCGAGCTGCTGGCGGCGGACCA
TTCACATCCACATCATCATCACCACTACCTCCACCAGGAACTGGAGGAGC
AGCATCAGCATCAGTTACATTCCCAGCACTTGCATAAGCGCCACCTCAAA
GGTAGATCTGCATCCGGATCGGGATCCGGACCGGGCTCGGGTTCTGGACT
GCGCCGCACCCAGAGCCTGAGCACCGCTATCGACAAGAGCGCTTCCGGGC
GCAGCTGCCACATTTGCTATGCGAACAACCAGAGCAAGGACATCTTCAAT
CTGCCGCAGATCAAGCCGGCGCCGCAGCTGACAGGGATTCCCCCCGTGGC
CGCCTGCAGCAACTCCCGTTTTGCCATCGCCAACGACACTTTTTGCAGGC
GCAAACAGAACAACAATAACAAGAACCAGAATCACAAGGTGGTTCGCGAG
AGCGGTGCCAAGCGGAAGTACAACTTTACCATCACCACGCTCTCTCGGTC
GGCGGCCAAGGATGCCGGCCATGGCCAAATGAAGCCACTGCGTCAGGTCG
TTAATCTAAATCTGAATCTACAGCAGGAGCCGCAGCAGAAGTCACCGGCT
AATCCGCAGCAGCTGCAGCGGAAAACCCAGCGGGAGCCAGCAGCAGTGAG
TATGAATCCCACGCAGTTCACCATTCCGCGGAACGGCGTCTTCATAGCCG
TCAACGAGTGGTCGGAGCCAATGGCCAGCAGCTCCTCCGTCTCCTCTAGC
TCCAACCATCATCATCACCATCACAGCAACAGCAATAGCAATAGCAGCGG
TAACAGCAACATCATCAACAACAACAGCAGCAGCTCCAGCGGCAGCAACA
AGTTGTATGAGAACGAATGCGTGGCCCTGGCCCAGCAGCAACTAAGAGCA
GCTGCTGCGCAGGCGGCACAGGCAGCCGCGACGGCGGTGGCCATTGCGAG
TTCGCCATCAGCTAAGGCTATGGCCGAACCAGCTCCAACGGCTACCATGC
CCATCTATGCGCAGGTGAACAAGCAGCACAAGCTCAAGAAGAAGCAACAG
ATTGCCAGCGAATCGCAAACGAACAACAACACTGGCAGTGGCGAGATCGC
GGATGCGGTCAGTGAATCCCTTACCGCCGGACTAGGCACTAGCACCGATG
GCAGCGGCGAGGCCAGCGAATCCGAGTCGCAGGTGGAGGAGCACTCCATC
TACGCCAAAGTGTGGAAGGGACCGCGCAAGGCGACCGAGTCGAAAATTAT
GCATGATCCAGGGAGCAGCAGCCGCCTATCAGGAGCCGCATCCGCAGCAG
CAGGGACCGCGTCAGCTGGAGCTATAGCTGCAGCCGTAGGAGCAGCTGCT
GCCTCGCGGCACGACAATAAGACACAGCTTGGCAACGGCAGCCGCAGTAA
GATGTGGATATGCATCAAATGTTCCTATGCCTACAACCGACTCTGGCTCC
AGACTTGCGAGATGTGCGAGGCCAAAGCCGAACAGCAGCAACAGCAGTTG
CAGCTGCAACAGCAGCAGCAGCAGCAGCAGCAGCACCACCACCACCACTT
GCAGCAGCAACAGGCAGCACCCCGCGACGAGCCATGGACCTGCAAGAAGT
GCACCCTGGTTAACTACTCGACAGCAATGGCCTGCGTGGTGTGCGGCGGC
TCCAAGCTGAAAAGCATCTCTTCCATCGAGGACATGACGTTGCGAAAGGG
CGAGTTCTGGACCTGCAGCCACTGTACGCTCAAGAACTCGCTGCACTCGC
CGGTCTGCAGTGCCTGCAAGTCCCACCGCCAGCCGCAGCTCTCGATGGCC
ATGGAGGCGGTACGGGAGCGACCGGATGGTCAGTCGTACGAGGAGCAGGA
TGCTGCAGCCGTCGGGGGCGGAGGAGGCAGTGCCCACCAATCGGGCGCCA
ATGAGGTCAAGGCGCCTACAGCCTTGAACCTACCGCTAACTTCGGTGGCG
TTGCCCATGCCCATGCTGCAGCTTCCAACGTCAACAGCGGCTGGTCTGCG
CGGCTCACGCAGTCCCTCGCCCAGGATGCAGCTGCTGCCATCACTCCAGC
AGCAGAGGAACTCCAGCTCATCGGGCGCTATACCTAAACGTCACAGCACC
GGCGGCTCCATTGTGCCACGGAACATTTCCATCGCTGGTCTGGCCAATTA
CAATTTGCAGCAGGGCCAGGGAGTCGGCTCCGCATCGGTAGTGTCTGCTT
CTGGAGCTGGATCTGGAGCTGGAGCTGTCGGAGCCAGTACCAGCACAAAG
AAGTGGCAGTGTCCCGCGTGCACGTACGATAACTGTGCCGCTTCCGTCGT
TTGTGACATCTGCTCGAGTCCGCGCGGCCTGGCGAGCGCAGTTTTGGGCG
AGGCGTTGGGCAGAAAGTCCGTTCGAGTTGCCCTCACACCGGCAGATATT
CGGCAGGAGAGCAAGCTGATGGAGAACCTTCGCCAGCTGGAGGAGACCGA
AGCGTTGACCAAGTGGCAAAACATCATACAGTACTGTCGCGACAATAGCG
AGCTTTTCGTGGACGATTCGTTTCCGCCGGCGCCGAAGAGTCTGTACTAC
AATCCGGCTAGCGGAGCAGGCGAGGGAAATCCTGTGGTGCAGTGGCGACG
GCCGCACGAGATTAACTGCGACGGCGGAGCGTATCCACCGTGGGCTGTGT
TCCGCACCCCGCTGCCCTCGGACATCTGCCAGGGCGTCTTGGGCAACTGC
TGGCTACTCAGTGCGCTGGCGGTGCTGGCGGAGCGCGAAGATCTGGTCAA
GGAGGTGCTGGTCACGAAGGAGATATGTGGCCAGGGCGCATACCAGGTGC
GCCTCTGCAAAGACGGCAAGTGGACGACGGTGCTGGTGGATGATCTGCTG
CCATGCGACAAGCGTGGCCATCTGGTCTATTCGCAGGCCAAGCGCAAGCA
GCTATGGGTGCCGCTGATCGAGAAGGCTGTGGCCAAGATCCACGGCTGCT
ACGAGGCGCTGGTCTCGGGCCGGGCGATCGAGGGACTGGCCACGCTGACA
GGAGCGCCTTGCGAGAGCATTCCACTACAGGCCAGTAGCTTGCCCATGCC
CAGCGAGGACGAACTGGACAAGGACCTGATATGGGCCCAGCTGCTGAGCT
CTCGATGCGTACGATTCCTCATGGGCGCCAGCTGTGGCGGTGGCAACATG
AAGGTGGACGAGGAGGAGTACCAGCAGAAGGGGCTGCGCCCGCGACACGC
CTACTCGGTGCTGGACGTGAAGGACATCCAGGGACATCGCCTGCTCAAGC
TACGCAATCCGTGGGGTCACTATTCGTGGCGTGGCGATTGGTCGGATGAC
TCCTCGCTGTGGACGGACGATCTTCGGGATGCTCTGATGCCGCACGGCGC
CAGCGAGGGCGTCTTCTGGATCTCGTTCGAGGATGTGCTTAACTACTTCG
ACTGCATCGATATCTGCAAGGTGCGCTCCGGCTGGAACGAGGTGCGTCTG
CAGGGGACATTGCAGCCCCTGTGCTCCATCTCCTGTGTGCTGCTCACCGT
GCTGGAGCCGACGGAGGCGGAGTTTACCCTATTCCAGGAGGGGCAGCGCA
ACTCGGAGAAGTCGCAGCGATCGCAGCTGGACCTGTGCGTTGTGATATTC
CGCACCCGGTCTCCGGCGGCGCCGGAAATCGGTCGATTAGTGGAGCACAG
CAAGCGTCAGGTGCGAGGCTTTGTGGGATGCCACAAGATGCTGGAGCGGG
ACATTTACCTGCTTGTGTGTCTGGCCTTCAACCATTGGCACACGGGCATC
GAGGATCCCCACCAGTATCCTCAATGCATCCTAGCGATACACAGCTCCAA
GCGTCTGCTGGTGGAGCAGATAAGTCCCTCGCCGCATCTCCTGGCCGACG
CTATCATTAGCCTGACCCTAACCAAGGGACAGCGGCACGAGGGGCGCGAG
GGGATGACCGCCTACTATCTGACCAAGGGCTGGGCGGGTCTGGTTGTGAT
GGTGGAAAATAGACATGAGAATAAGTGGATCCATGTGAAATGTGATTGCC
AGGAGAGCTACAATGTGGTGTCGACACGCGGCGAACTCAAGACAGTGGAC
TCTGTGCCCCCGCTGCAGAGACAAGTAATCATCGTTCTCACCCAACTAGA
GGGCAGTGGCGGCTTCAGCATCGCCCACCGGCTGACCCATCGTCTGGCGA
ATTCCCGCGGCCTGCACGACTGGGGGCCACCCGGCGCCACCCACTGCCCG
CCCATCGAGAATGTCCATGGACTGCACGCTCCGCGGCTAATCACCGCAAG
CTTTCTAGACCAT
BO33470.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RE | 4782 | CG1391-PE | 1..4779 | 17..4795 | 23865 | 100 | Plus |
| sol-RB | 4785 | CG1391-PB | 1..4782 | 17..4795 | 23800 | 99.9 | Plus |
| sol-RF | 4548 | CG1391-PF | 5..4545 | 258..4795 | 22595 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-RE | 5589 | CG1391-RE | 330..5108 | 17..4795 | 23865 | 100 | Plus |
| sol-RB | 5592 | CG1391-RB | 330..5111 | 17..4795 | 23800 | 99.9 | Plus |
| sol-RF | 5153 | CG1391-RF | 132..4672 | 258..4795 | 22595 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21354481..21356072 | 2116..3707 | 7930 | 99.9 | Plus |
| X | 23542271 | X | 21352750..21353665 | 882..1797 | 4580 | 100 | Plus |
| X | 23542271 | X | 21351857..21352486 | 256..885 | 3150 | 100 | Plus |
| X | 23542271 | X | 21356138..21356650 | 3701..4213 | 2565 | 100 | Plus |
| X | 23542271 | X | 21354094..21354413 | 1798..2117 | 1600 | 100 | Plus |
| X | 23542271 | X | 21356705..21356974 | 4209..4478 | 1350 | 100 | Plus |
| X | 23542271 | X | 21350609..21350851 | 17..259 | 1215 | 100 | Plus |
| X | 23542271 | X | 21357255..21357431 | 4619..4795 | 885 | 100 | Plus |
| X | 23542271 | X | 21357043..21357187 | 4476..4620 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 629..712 | 1917..1834 | 186 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2415 | 595..695 | 145 | 60.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2741..2834 | 926..1018 | 134 | 61.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 660..734 | 1898..1824 | 132 | 64 | Minus |
BO33470.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:49 Download gff for
BO33470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RE | 280..5058 | 17..4797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:43 Download gff for
BO33470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RE | 330..5108 | 17..4797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:45 Download gff for
BO33470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sol-RE | 330..5108 | 17..4797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:45 Download gff for
BO33470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21357257..21357431 | 4621..4797 | 98 | | Plus |
| X | 21350609..21350850 | 17..258 | 100 | -> | Plus |
| X | 21356707..21356973 | 4211..4477 | 100 | -> | Plus |
| X | 21357045..21357187 | 4478..4620 | 100 | -> | Plus |
| X | 21351860..21352485 | 259..884 | 100 | -> | Plus |
| X | 21352753..21353665 | 885..1797 | 100 | -> | Plus |
| X | 21354094..21354413 | 1798..2117 | 100 | -> | Plus |
| X | 21354483..21356068 | 2118..3703 | 99 | -> | Plus |
| X | 21356141..21356647 | 3704..4210 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:43 Download gff for
BO33470.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21228284..21228458 | 4621..4797 | 98 | | Plus |
| arm_X | 21227734..21228000 | 4211..4477 | 100 | -> | Plus |
| arm_X | 21228072..21228214 | 4478..4620 | 100 | -> | Plus |
| arm_X | 21221636..21221877 | 17..258 | 100 | -> | Plus |
| arm_X | 21222887..21223512 | 259..884 | 100 | -> | Plus |
| arm_X | 21223780..21224692 | 885..1797 | 100 | -> | Plus |
| arm_X | 21225121..21225440 | 1798..2117 | 100 | -> | Plus |
| arm_X | 21225510..21227095 | 2118..3703 | 99 | -> | Plus |
| arm_X | 21227168..21227674 | 3704..4210 | 100 | -> | Plus |
BO33470.pep Sequence
Translation from 16 to 4813
> BO33470.pep
MGTISSVLQWSCTKCNTINPTESLKCFNCGTVRKVFPQQQQQQHRSSSIT
ASWTADDALEQEQAEKGQERDKEKGRAAVARSEYKHVYKSLLRGCLKRPQ
RNSQNLPANCVDCEDTRKYIKSSIELYRHFSNPALNRRWVCHACGTDNSS
VTWHCLICDTVSYLAPIYKDAIAADRGQDLAGSLGNRGELLAADHSHPHH
HHHYLHQELEEQHQHQLHSQHLHKRHLKGRSASGSGSGPGSGSGLRRTQS
LSTAIDKSASGRSCHICYANNQSKDIFNLPQIKPAPQLTGIPPVAACSNS
RFAIANDTFCRRKQNNNNKNQNHKVVRESGAKRKYNFTITTLSRSAAKDA
GHGQMKPLRQVVNLNLNLQQEPQQKSPANPQQLQRKTQREPAAVSMNPTQ
FTIPRNGVFIAVNEWSEPMASSSSVSSSSNHHHHHHSNSNSNSSGNSNII
NNNSSSSSGSNKLYENECVALAQQQLRAAAAQAAQAAATAVAIASSPSAK
AMAEPAPTATMPIYAQVNKQHKLKKKQQIASESQTNNNTGSGEIADAVSE
SLTAGLGTSTDGSGEASESESQVEEHSIYAKVWKGPRKATESKIMHDPGS
SSRLSGAASAAAGTASAGAIAAAVGAAAASRHDNKTQLGNGSRSKMWICI
KCSYAYNRLWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHHHHLQQQQA
APRDEPWTCKKCTLVNYSTAMACVVCGGSKLKSISSIEDMTLRKGEFWTC
SHCTLKNSLHSPVCSACKSHRQPQLSMAMEAVRERPDGQSYEEQDAAAVG
GGGGSAHQSGANEVKAPTALNLPLTSVALPMPMLQLPTSTAAGLRGSRSP
SPRMQLLPSLQQQRNSSSSGAIPKRHSTGGSIVPRNISIAGLANYNLQQG
QGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAASVVCDICS
SPRGLASAVLGEALGRKSVRVALTPADIRQESKLMENLRQLEETEALTKW
QNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQWRRPHEIN
CDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVT
KEICGQGAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKRKQLWVPL
IEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDEL
DKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKGLRPRHAYSVLD
VKDIQGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHGASEGVF
WISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQPLCSISCVLLTVLEPTE
AEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVR
GFVGCHKMLERDIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKRLLVE
QISPSPHLLADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVVMVENRH
ENKWIHVKCDCQESYNVVSTRGELKTVDSVPPLQRQVIIVLTQLEGSGGF
SIAHRLTHRLANSRGLHDWGPPGATHCPPIENVHGLHAPRLITASFLDH
BO33470.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sol-PE | 1593 | CG1391-PE | 1..1593 | 1..1593 | 8434 | 100 | Plus |
| sol-PB | 1594 | CG1391-PB | 1..1594 | 1..1593 | 8422 | 99.9 | Plus |
| sol-PF | 1515 | CG1391-PF | 2..1515 | 81..1593 | 8000 | 99.9 | Plus |
| sol-PA | 395 | CG1391-PA | 1..393 | 1..393 | 2109 | 100 | Plus |
| CalpA-PA | 565 | CG7563-PA | 25..386 | 954..1319 | 363 | 30.1 | Plus |
