BO33479.complete Sequence
1045 bp assembled on 2012-08-22
GenBank Submission: KX798751
> BO33479.complete
GAAGTTATCAGTCGACATGAGTATGAACTACCACAACTACAACAGCAGCT
CGCGATTCGAAATGGTCGTGGAGATAGCCAATATCGCGCTGGATGAGTTC
AAGACCCATCACATAACGCGCAACTATACGGGCCTCGTGCAGCGCTACTA
CCAGCTGGTGGAAGAGGATTACGGCGATCCGCGAGCAAAGCGCTTCCCGC
TGATGGAGCACCCAATGTTCACCTTTGGCATGGTGGCCGTCTACTTATCC
TGGGTCCTGGTCATTGGACCATTGTTCATGCGCGATCGCAAGCCTTTCCA
GCTGCGCCGCACCCTGGTCGTCTACAATGCCTTCCAGGTGGCCCTCAGTG
GGTATATGTTCTACGAGCACCTAATGGCAGGCTGGCTGAACTACTACAAT
CTGAAGTGCCAACCGGTTGACTACTCCGATAGTCCCAGTTCCAAGCGGAT
GCTCAACCTGTGCTACCTGTACTACCTGTCCAAGCTGACCGAGTTCGCCG
ACACCATGTTCTTTGTGCTGCGCAAGAAATCCTCCCAAATCACCTGGCTG
CACGTGTACCATCACTCGGTAACTCCGCTGGAGACATGGGTGCTGGTTAA
GTTCCTCGCAGGTGGAAACGCCACGTTCCCGAATCTGCTGAACAACTTTG
TGCACGTTTGCATGTACTTCTACTACATGATGGCCGCCATGGGACCCGAG
TACGCCAAGTTCCTGTGGTGGAAGAAATATATGACCGAGCTGCAGATCGC
CCAGTTCGTGCTGTGCATCTTCCACACCCTCCGCGCCCTCTTCAGCAACC
AGTGCCAGTTCTCCAAGTTCATCTCTGCGCTGCTCCTATTGAATGCATCC
ATTTTCTTCTGCCTCTTCATGAACTTCTACATGCAGAGCTACAGGAAGAC
CAAGGCGGCGCAGCAACTGCAGCAGCAGCAGCAACAGCAGAAGCAACAGC
AGCAACTGGATGCCACGCCCTGCAAGGCGGACAGCAACAATAACACGGCG
ATGCTGGCGCAAAAGCTGAAAGCCAACGCAAGCTTTCTAGACCAT
BO33479.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33110-RA | 1014 | CG33110-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
| bond-RC | 969 | CG6921-PC | 532..618 | 650..736 | 255 | 86.2 | Plus |
| bond-RA | 969 | CG6921-PA | 532..618 | 650..736 | 255 | 86.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33110-RA | 2005 | CG33110-RA | 315..1326 | 16..1027 | 5060 | 100 | Plus |
| bond-RC | 1503 | CG6921-RC | 695..781 | 650..736 | 255 | 86.2 | Plus |
| bond-RA | 1627 | CG6921-RA | 819..905 | 650..736 | 255 | 86.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22579435..22579713 | 749..1027 | 1395 | 100 | Plus |
| 3R | 32079331 | 3R | 22572394..22572585 | 176..367 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 22574361..22574527 | 448..614 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 22570502..22570662 | 16..176 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 22574760..22574900 | 609..749 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 22572665..22572747 | 366..448 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 22555686..22555772 | 650..736 | 255 | 86.2 | Plus |
| 3R | 32079331 | 3R | 7982832..7982957 | 763..638 | 240 | 79.4 | Minus |
| 3R | 32079331 | 3R | 22559985..22560078 | 367..274 | 200 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:23:28 has no hits.
BO33479.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:19 Download gff for
BO33479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 315..1325 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:25 Download gff for
BO33479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 316..1326 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:11 Download gff for
BO33479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33110-RA | 316..1326 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:11 Download gff for
BO33479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22572667..22572747 | 368..448 | 100 | -> | Plus |
| 3R | 22574362..22574524 | 449..611 | 100 | -> | Plus |
| 3R | 22574763..22574899 | 612..748 | 100 | -> | Plus |
| 3R | 22570503..22570662 | 17..176 | 100 | -> | Plus |
| 3R | 22572395..22572585 | 177..367 | 100 | -> | Plus |
| 3R | 22579435..22579713 | 749..1029 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:25 Download gff for
BO33479.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18405157..18405435 | 749..1029 | 99 | | Plus |
| arm_3R | 18396225..18396384 | 17..176 | 100 | -> | Plus |
| arm_3R | 18398117..18398307 | 177..367 | 100 | -> | Plus |
| arm_3R | 18398389..18398469 | 368..448 | 100 | -> | Plus |
| arm_3R | 18400084..18400246 | 449..611 | 100 | -> | Plus |
| arm_3R | 18400485..18400621 | 612..748 | 100 | -> | Plus |
BO33479.pep Sequence
Translation from 16 to 1045
> BO33479.pep
MSMNYHNYNSSSRFEMVVEIANIALDEFKTHHITRNYTGLVQRYYQLVEE
DYGDPRAKRFPLMEHPMFTFGMVAVYLSWVLVIGPLFMRDRKPFQLRRTL
VVYNAFQVALSGYMFYEHLMAGWLNYYNLKCQPVDYSDSPSSKRMLNLCY
LYYLSKLTEFADTMFFVLRKKSSQITWLHVYHHSVTPLETWVLVKFLAGG
NATFPNLLNNFVHVCMYFYYMMAAMGPEYAKFLWWKKYMTELQIAQFVLC
IFHTLRALFSNQCQFSKFISALLLLNASIFFCLFMNFYMQSYRKTKAAQQ
LQQQQQQQKQQQQLDATPCKADSNNNTAMLAQKLKANASFLDH
BO33479.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33110-PA | 337 | CG33110-PA | 1..337 | 1..337 | 1801 | 100 | Plus |
| CG31522-PH | 364 | CG31522-PH | 3..258 | 40..293 | 687 | 49 | Plus |
| CG31522-PG | 364 | CG31522-PG | 3..258 | 40..293 | 687 | 49 | Plus |
| CG31522-PA | 364 | CG31522-PA | 3..258 | 40..293 | 687 | 49 | Plus |
| CG5326-PA | 277 | CG5326-PA | 21..269 | 51..299 | 663 | 48.6 | Plus |
