BO33483.complete Sequence
1543 bp assembled on 2012-10-01
GenBank Submission: KX799228
> BO33483.complete
GAAGTTATCAGTCGACATGCGGCGTCCGAAGATATCCCTCAAAAAGTACT
TCTACCTAACTCTGATCTGTGCCCTCCTCCTCATATTCGGTTTCAGTCTC
AAAGAGCGCGAAATATGGAAGACGCTGAGTCCACGATCGTCACAGATAAC
CACACAGCAGCAGCAGCACCAGCATCTGCATCAACTGCAGTCCATGGACG
AGGAACATCCGATGGCCACCAGCTCCACTCCTCCGCCGATTGCGGCCACT
TTACTGCCCGAGGTGGCGGATAATCTCGTCGAGGAGCCGGAGCAGACGGT
TCTGGAGGAGGAGGAAAGCGAGGCGGATCGCCTGCAAGAGCCGCCGGCGG
AAAAGGCCTGGTTCTTCAAGAACGGAGAGTACTATCCAAAGCCGGCCAAG
ACCTACAGCAATCGCAAGGCCAGGAAGCGGCATGCCCCACGATTGCTGCC
GCATCAGGATCCCTATTCCGATCGCATTATTAACCAGCTAATGTACGTGC
CGCACAACTACGAGGAGATCAAGTCCAGCGGCAAACTGAAGACCATCCTA
CTCTACAACGGATTGGGTCCGTGGAACGTGAAGAAGGGTCGCGACGTCTT
CCTGAAAGCCAAGTGTCCCGTTGACACCTGCGAACTGACTGCCAATCGCG
ATCTGGCCAGCACGGCCGACATGATCCTCTACAAGGATCACTACATACCC
ACGGGCATTCGACGGCCCAGCAACTCCAAGCAGGTGTCCATGCTGTACTA
TCTGGAGTGTCCGTATCACACGCAGAATGTCAAGGTGCCCGATGCCATCA
ATTGGACTGCCACCTACAGACGGGATAGTACAATTGTTGCACCCTATGAA
AAGTGGCAGTACTACGACACAAAGGTGCAGCAGCAGGAGCAGGATATCAA
CTACTCCGTCAACAAGACCAAGAAAGTGGCCTGGTTTGTGTCCAACTGTG
GAGCGAGGAATGGCCGTCTCCAGTATGCCCATGAGCTGCAGAAATATATA
GAGGTTGACATCTATGGAGCGTGTGGCAACTTCAAGTGCTCCCGCAGCAC
AGCGGACAAGTGCTTCGAGATCCTGGACAACGACTATAAGTTCTATCTGG
CGTTCGAGAACTCCAACTGCAAGGACTACATCACGGAGAAGTTCTTCGTG
AATGCGCTGAACAGAAGGGTCCTGCCCATCGTCATGGGCGCCCGGCCAGA
GGACTACGAGGTGAGTGCTCCGCGAAGATCATACATCCACGTGGACGAGT
TCTCATCGCCCAAAGAGCTGGCCGAGTATCTGCGCATCCTGGACCACGAC
GACGAGCTGTACAACTCGTACTTTAAGTGGAAGGGCACCGGTGAGTTCAT
CAACACGTACTACTGGTGTCGCGTGTGTGCCACGCTCCACAACGAGGAGC
AACTGCGGAAGCCACGATGGTACACGGATCTCAATGACTGGTGGCGGGGA
CCTGGAGTCTGCACGACGAGATCCTGGCGCAACTTCAAGGCGCGCAAGGA
CGTCATTAGCGACTCCAGCGACGACGCAAGCTTTCTAGACCAT
BO33483.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTA-RB | 1512 | CG6869-PB | 1..1509 | 17..1525 | 7545 | 100 | Plus |
| FucTA-RA | 1512 | CG6869-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:31:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTA-RB | 2974 | CG6869-RB | 309..1818 | 16..1525 | 7550 | 100 | Plus |
| FucTA-RA | 3133 | CG6869-RA | 370..1879 | 16..1525 | 7550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15151468..15152184 | 103..819 | 3585 | 100 | Plus |
| 3L | 28110227 | 3L | 15152618..15153141 | 1002..1525 | 2620 | 100 | Plus |
| 3L | 28110227 | 3L | 15152367..15152555 | 817..1005 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 15150915..15151001 | 16..102 | 435 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:31:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2380 | 148..189 | 131 | 81.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 952..1010 | 131..190 | 127 | 72.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2488 | 132..189 | 121 | 69.5 | Plus |
BO33483.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:51:24 Download gff for
BO33483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTA-RA | 368..1876 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:53 Download gff for
BO33483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTA-RA | 371..1879 | 17..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:07 Download gff for
BO33483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucTA-RA | 371..1879 | 17..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:07 Download gff for
BO33483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15150916..15151001 | 17..102 | 100 | -> | Plus |
| 3L | 15151468..15152184 | 103..819 | 100 | -> | Plus |
| 3L | 15152370..15152553 | 820..1003 | 100 | -> | Plus |
| 3L | 15152620..15153141 | 1004..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:53 Download gff for
BO33483.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15144016..15144101 | 17..102 | 100 | -> | Plus |
| arm_3L | 15144568..15145284 | 103..819 | 100 | -> | Plus |
| arm_3L | 15145470..15145653 | 820..1003 | 100 | -> | Plus |
| arm_3L | 15145720..15146241 | 1004..1527 | 99 | | Plus |
BO33483.pep Sequence
Translation from 16 to 1543
> BO33483.pep
MRRPKISLKKYFYLTLICALLLIFGFSLKEREIWKTLSPRSSQITTQQQQ
HQHLHQLQSMDEEHPMATSSTPPPIAATLLPEVADNLVEEPEQTVLEEEE
SEADRLQEPPAEKAWFFKNGEYYPKPAKTYSNRKARKRHAPRLLPHQDPY
SDRIINQLMYVPHNYEEIKSSGKLKTILLYNGLGPWNVKKGRDVFLKAKC
PVDTCELTANRDLASTADMILYKDHYIPTGIRRPSNSKQVSMLYYLECPY
HTQNVKVPDAINWTATYRRDSTIVAPYEKWQYYDTKVQQQEQDINYSVNK
TKKVAWFVSNCGARNGRLQYAHELQKYIEVDIYGACGNFKCSRSTADKCF
EILDNDYKFYLAFENSNCKDYITEKFFVNALNRRVLPIVMGARPEDYEVS
APRRSYIHVDEFSSPKELAEYLRILDHDDELYNSYFKWKGTGEFINTYYW
CRVCATLHNEEQLRKPRWYTDLNDWWRGPGVCTTRSWRNFKARKDVISDS
SDDASFLDH
BO33483.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucTA-PB | 503 | CG6869-PB | 1..503 | 1..503 | 2735 | 100 | Plus |
| FucTA-PA | 503 | CG6869-PA | 1..503 | 1..503 | 2735 | 100 | Plus |
| FucTC-PB | 425 | CG40305-PB | 103..413 | 186..476 | 400 | 33.1 | Plus |
| FucTB-PD | 444 | CG4435-PD | 31..315 | 164..439 | 252 | 29.5 | Plus |
| FucTB-PA | 444 | CG4435-PA | 31..315 | 164..439 | 252 | 29.5 | Plus |
