BO33486.complete Sequence
1048 bp assembled on 2013-04-30
GenBank Submission: KX798432
> BO33486.complete
GAAGTTATCAGTCGACATGTTGGCGAAAATTACAAGGAGTTCATTTTACG
CTTCACGTGCGGTTGGTCGCTTGTCCGGCTCGATTCCAACGTCACCAGCG
GCCCTTGCCAGCAATTGCAGATATATTCAGATAGAACGGAAGCGCACGAA
ATCACACGAGATGGCTCTGTACGAAACCGTTGAGAAGGGCGCTAAGAATT
CGCCGAGCTACAGCCTGTATTTCAAAAACAAGTGCGGCAATGTCATCTCG
CCGATGCACGACATTCCACTGTACGCCAACGAGGAGAAAACTATCTACAA
CATGGTGGTGGAGGTGCCACGTTGGACCAACGCGAAAATGGAGATTAGCT
TGAAGACCCCTATGAATCCCATCAAGCAGGACATCAAGAAGGGTAAGCTG
CGGTTCGTGGCCAACTGCTTCCCGCACAAGGGCTACATCTGGAACTACGG
AGCCCTGCCCCAGACCTGGGAAAACCCCGACCACATCGAGCCCTCCACCG
GCTGCAAGGGTGACAACGATCCCATCGATGTCATCGAGATTGGCTACCGA
GTGGCTAAGCGCGGCGACGTGCTGAAGGTCAAGGTGCTGGGCACCATTGC
CTTGATTGACGAGGGCGAAACCGACTGGAAGATAATCGCCATCGATGTGA
ACGATCCGTTGGCCTCGAAAGTCAATGATATCGCCGATGTGGACCAGTAC
TTCCCGGGTCTGCTTCGTGCCACCGTTGAGTGGTTCAAGATCTACAAGAT
CCCCGATGGCAAGCCTGAGAATCAGTTTGCTTTCAACGGCGATGCCAAGA
ATGCGGACTTTGCCAACACCATCATTGCCGAGACCCACAAGTTCTGGCAG
AACTTGGTGCACCAGAGCCCCGCATCCGGGTCCATCTCCACCACCAACAT
CACCAACCGCAACTCGGAGCACGTCATTCCCAAGGAGGAGGCCGAGAAGA
TACTGGCCGAGGCCCCCGATGGCGGCCAGGTCGAGGAGGTGTCTGATACA
GTCGACACTTGGCATTTCATTCATCTCAAGGCAAGCTTTCTAGACCAT
BO33486.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:33:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RA | 1017 | CG4634-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
| Nurf-38-RB | 873 | CG4634-PB | 1..870 | 161..1030 | 4350 | 100 | Plus |
| Nurf-38-RC | 873 | CG4634-PC | 1..841 | 161..1001 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:33:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-RA | 1178 | CG4634-RA | 28..1041 | 17..1030 | 5070 | 100 | Plus |
| Nurf-38-RB | 1144 | CG4634-RB | 1..1007 | 24..1030 | 5035 | 100 | Plus |
| Nurf-38-RC | 1281 | CG4634-RC | 1..978 | 24..1001 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24559830..24560227 | 739..342 | 1990 | 100 | Minus |
| 2R | 25286936 | 2R | 24560853..24561060 | 224..17 | 1040 | 100 | Minus |
| 2R | 25286936 | 2R | 24559623..24559776 | 891..738 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 24560292..24560410 | 343..225 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 24559455..24559564 | 1001..892 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:33:06 has no hits.
BO33486.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-30 11:55:47 Download gff for
BO33486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RA | 33..1041 | 22..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:03 Download gff for
BO33486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RA | 33..1041 | 22..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:29:25 Download gff for
BO33486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nurf-38-RA | 33..1041 | 22..1032 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:29:25 Download gff for
BO33486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24559101..24559132 | 1002..1032 | 93 | <- | Minus |
| 2R | 24559455..24559564 | 892..1001 | 100 | <- | Minus |
| 2R | 24559623..24559774 | 740..891 | 100 | <- | Minus |
| 2R | 24559830..24560225 | 344..739 | 100 | <- | Minus |
| 2R | 24560292..24560410 | 225..343 | 100 | <- | Minus |
| 2R | 24560853..24561055 | 22..224 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:03 Download gff for
BO33486.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20448376..20448578 | 22..224 | 100 | | Minus |
| arm_2R | 20446624..20446655 | 1002..1032 | 93 | <- | Minus |
| arm_2R | 20446978..20447087 | 892..1001 | 100 | <- | Minus |
| arm_2R | 20447146..20447297 | 740..891 | 100 | <- | Minus |
| arm_2R | 20447353..20447748 | 344..739 | 100 | <- | Minus |
| arm_2R | 20447815..20447933 | 225..343 | 100 | <- | Minus |
BO33486.pep Sequence
Translation from 16 to 1048
> BO33486.pep
MLAKITRSSFYASRAVGRLSGSIPTSPAALASNCRYIQIERKRTKSHEMA
LYETVEKGAKNSPSYSLYFKNKCGNVISPMHDIPLYANEEKTIYNMVVEV
PRWTNAKMEISLKTPMNPIKQDIKKGKLRFVANCFPHKGYIWNYGALPQT
WENPDHIEPSTGCKGDNDPIDVIEIGYRVAKRGDVLKVKVLGTIALIDEG
ETDWKIIAIDVNDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDGKP
ENQFAFNGDAKNADFANTIIAETHKFWQNLVHQSPASGSISTTNITNRNS
EHVIPKEEAEKILAEAPDGGQVEEVSDTVDTWHFIHLKASFLDH
BO33486.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:14:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nurf-38-PA | 338 | CG4634-PA | 1..338 | 1..338 | 1794 | 100 | Plus |
| Nurf-38-PB | 290 | CG4634-PB | 1..290 | 49..338 | 1557 | 100 | Plus |
| Nurf-38-PC | 290 | CG4634-PC | 1..280 | 49..328 | 1496 | 100 | Plus |
