BO33487.complete Sequence
1837 bp assembled on 2012-10-01
GenBank Submission: KX799219
> BO33487.complete
GAAGTTATCAGTCGACATGGCAAAGCCAAGGTCATCGGCAGATGCGGCTG
GAAATGGCAGTGGAGCAGTGGATGCAGAGCCCAAGCTCAACTATTTCCAG
AAACTGTGGCGCTATCGCCACTATCTGGTCATCGAGCCCTTCTTCTTTTT
CTACTTCATGGCCTCCGTGTTCAATGCGGTGGCCATGCAGAATTTCCCAC
TGGACAAGGCGTGTCGCGTGAATCTCGGCTACAACAAGATCGTCTGCGAC
ACAATGCTGGACAAATCGGAGCTGGGCATCGAGTGCGATGACTTTGATTT
CGAGAACACCACACAGGGCGCGACGCCGGATCTCGCTGACCTTGTCATCG
GAGCCACTGGCTTCAACTACACGGTGTGCAAGGCGGAACTGGAGGCACAG
ATCCTGGCGGCAGATGTCTCCGGGAAACGAGCTCCCATGGCTGCCATTTT
CCCGCTGATTGTCTTACTTTTTGCTGGAGGATGGGCAGATCGATACAACA
AACGAAAGCCTTGCATGATAATGCCAATTATTGGAGAGGCATTATCTTTC
ACCTGTCAGATTATCTCATCGATTTTTTTTGAATCGCTGCCAATGGAGTT
TGGCGCCTACTGTGAGGCTATAGTTCCAGCTCTCTTCGGAGGATTAACCT
TCTGTTTGATGGCAATCTATAGCTACATCACCATAGCCACGCCGGAGGAG
GATCGCGTGTTCCGTTTCGGCATCTTTGCCATGTTCGTCACTGGAGTTCC
GTTTATAGGACAACCGATTAGTGGAGTTCTCTTCACAACTTTGGGCTACA
CATGGTCCTTTGCCTCCGCCATTGTCTTTCAGCTGATTGCGATATTTTAC
ATAATTTTCTTCATAAAAGAGGTGAAGACCACGCCCACCACCAGCACCAC
TGCGAATGAGCCACCACCACTGCCCACCAGTCTGCCGCCCAAGCAGCAGG
GAGCCGACAATATGGCCTACGAGACCACCAATTTGGATGAGCTGCAGGGT
AACAAGAACGTCAACTTCCAGCTAACTCCGCAAATGGAGCCCAAAGTGGA
GGTGGTGCCGCCAAAACGATCACTCTTGAAGGAACTTTTCGATCCCACCC
TGGTGCTGGACTGCATCCGTTTTCCGCTGGTCAAGCGACCCAATAACGGC
AGAATGTTGCTAATCCTGCTGCTGTGTGCCTACTTCCTGACCGTCGGGCC
CACTTCCGGTGAGAACGACTATTGGTATCGATTCACGCTGAAGAAGCTCG
CCTGGAACGGCAACGACTTTAGTATCTACCTCACCCTGTCCAGTGGCGCT
GCACTGGTGGGCACCTTCATTGGCACTGCCATCTTGAGCAAGCTACTCAA
GGTCTCCGACTCCATGATTGGCATGCTCTCCGCCCTGTCCATTGTCTGTT
CCCGCGTCCTTTTCGCCTTCTCCAGCAGCACTGCCTCATTTTACGTTGCT
GGTGTGGTGGACATGTTCGTCAGTCTGCGAGTGATTGCCATCAAGACCAT
CGGTTCGAGCATTGTGGCTGGCGACGAGCTGAGCAAAATGTACTCCATCT
TTGGCATCAGTGAGCCAATTGCCCAATTCATTTTCCCGCCAATCTTCAGT
GAGATTTACAAGAGCACGGTGGATTCATTCCCAGGTGCCATTTGGCTCTT
TGGCGAAATCTTCTACATTCCCAATGTCTTGGTCTTCGTTGTGTGCTACT
TCCTGCTGCGGCGTCGAAAGGCCAACGAGGAGAAGAGCGTCGTGGAAATG
GAGCAGAATGGTGGAGCAAATGGTGGCAATCGGGCAAGCGTGGTGCCCGA
TAGCGAAATAACTAGTCTGGCAAGCTTTCTAGACCAT
BO33487.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31321-RB | 1806 | CG31321-PB | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31321-RB | 2198 | CG31321-RB | 155..1957 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14310516..14310939 | 17..440 | 2120 | 100 | Plus |
| 3R | 32079331 | 3R | 14312753..14313101 | 804..1152 | 1745 | 100 | Plus |
| 3R | 32079331 | 3R | 14313162..14313427 | 1150..1415 | 1330 | 100 | Plus |
| 3R | 32079331 | 3R | 14312438..14312687 | 555..804 | 1250 | 100 | Plus |
| 3R | 32079331 | 3R | 14313819..14313975 | 1533..1689 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 14314042..14314171 | 1690..1819 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 14313490..14313608 | 1415..1533 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 14312265..14312381 | 440..556 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:32:04 has no hits.
BO33487.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:51:26 Download gff for
BO33487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31321-RB | 150..1952 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:57 Download gff for
BO33487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31321-RB | 154..1956 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:16 Download gff for
BO33487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31321-RB | 155..1957 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:16 Download gff for
BO33487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14313490..14313607 | 1415..1532 | 100 | -> | Plus |
| 3R | 14313165..14313426 | 1153..1414 | 100 | -> | Plus |
| 3R | 14313819..14313975 | 1533..1689 | 100 | -> | Plus |
| 3R | 14314042..14314171 | 1690..1821 | 98 | | Plus |
| 3R | 14310516..14310939 | 17..440 | 100 | -> | Plus |
| 3R | 14312266..14312379 | 441..554 | 100 | -> | Plus |
| 3R | 14312438..14312686 | 555..803 | 100 | -> | Plus |
| 3R | 14312753..14313101 | 804..1152 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:57 Download gff for
BO33487.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10138475..10138823 | 804..1152 | 100 | -> | Plus |
| arm_3R | 10136238..10136661 | 17..440 | 100 | -> | Plus |
| arm_3R | 10137988..10138101 | 441..554 | 100 | -> | Plus |
| arm_3R | 10138160..10138408 | 555..803 | 100 | -> | Plus |
| arm_3R | 10138887..10139148 | 1153..1414 | 100 | -> | Plus |
| arm_3R | 10139212..10139329 | 1415..1532 | 100 | -> | Plus |
| arm_3R | 10139541..10139697 | 1533..1689 | 100 | -> | Plus |
| arm_3R | 10139764..10139893 | 1690..1821 | 98 | | Plus |
BO33487.pep Sequence
Translation from 16 to 1837
> BO33487.pep
MAKPRSSADAAGNGSGAVDAEPKLNYFQKLWRYRHYLVIEPFFFFYFMAS
VFNAVAMQNFPLDKACRVNLGYNKIVCDTMLDKSELGIECDDFDFENTTQ
GATPDLADLVIGATGFNYTVCKAELEAQILAADVSGKRAPMAAIFPLIVL
LFAGGWADRYNKRKPCMIMPIIGEALSFTCQIISSIFFESLPMEFGAYCE
AIVPALFGGLTFCLMAIYSYITIATPEEDRVFRFGIFAMFVTGVPFIGQP
ISGVLFTTLGYTWSFASAIVFQLIAIFYIIFFIKEVKTTPTTSTTANEPP
PLPTSLPPKQQGADNMAYETTNLDELQGNKNVNFQLTPQMEPKVEVVPPK
RSLLKELFDPTLVLDCIRFPLVKRPNNGRMLLILLLCAYFLTVGPTSGEN
DYWYRFTLKKLAWNGNDFSIYLTLSSGAALVGTFIGTAILSKLLKVSDSM
IGMLSALSIVCSRVLFAFSSSTASFYVAGVVDMFVSLRVIAIKTIGSSIV
AGDELSKMYSIFGISEPIAQFIFPPIFSEIYKSTVDSFPGAIWLFGEIFY
IPNVLVFVVCYFLLRRRKANEEKSVVEMEQNGGANGGNRASVVPDSEITS
LASFLDH
BO33487.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31321-PB | 601 | CG31321-PB | 1..601 | 1..601 | 3103 | 100 | Plus |
| CG15890-PB | 599 | CG15890-PB | 48..535 | 15..585 | 605 | 28.3 | Plus |
| CG15890-PA | 599 | CG15890-PA | 48..535 | 15..585 | 605 | 28.3 | Plus |
| CG15553-PC | 521 | CG15553-PC | 23..507 | 39..565 | 327 | 23.5 | Plus |
| CG8008-PB | 566 | CG8008-PB | 28..552 | 39..565 | 294 | 22.5 | Plus |
