Clone BO33502 Report

Search the DGRC for BO33502

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:335
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptSmD2-RA
Protein status:BO33502.pep: Imported from assembly
Sequenced Size:391

Clone Sequence Records

BO33502.complete Sequence

391 bp assembled on 2012-12-19

GenBank Submission: KX794353

> BO33502.complete
GAAGTTATCAGTCGACATGGCTCTTGTGAAACCGAAATCGGAGCTGACCC
CGGAGGAGCTGGCGCGGCAGGAGGAGGAGGAGTTTAACACCGGCCCGCTG
TCCGTGCTCACGCAGTCCGTGAAGAACAACACCCAGGTGCTCATCAACTG
CCGCAACAACAAGAAGCTGCTGGGCAGGGTAAAGGCCTTCGATCGGCACT
GCAACATGGTACTGGAAAACGTGAAGGAGATGTGGACGGAGCTGCCGCGG
ACCGGTAAGGGCAAGAAGAAGGTGAAGCCCGTGAACAAGGATCGGTTCAT
ATCGAAGATGTTCCTGCGAGGCGATTCTGTCATCCTGGTCCTAAGGAATC
CCCTGGCCACGGCGGCCGGCAAGGCAAGCTTTCTAGACCAT

BO33502.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:00:39
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 360 CG1249-PA 1..357 17..373 1785 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-RA 778 CG1249-RA 140..496 17..373 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6345282..6345636 373..19 1775 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:00:38 has no hits.

BO33502.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:48 Download gff for BO33502.complete
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 149..505 17..375 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:26 Download gff for BO33502.complete
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 140..496 17..375 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:12 Download gff for BO33502.complete
Subject Subject Range Query Range Percent Splice Strand
SmD2-RA 140..496 17..375 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:12 Download gff for BO33502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6345280..6345638 17..375 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:26 Download gff for BO33502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2171002..2171360 17..375 99   Minus

BO33502.pep Sequence

Translation from 16 to 391

> BO33502.pep
MALVKPKSELTPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKK
LLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFL
RGDSVILVLRNPLATAAGKASFLDH

BO33502.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
SmD2-PA 119 CG1249-PA 1..119 1..119 608 100 Plus