BO33506.complete Sequence
616 bp assembled on 2012-12-19
GenBank Submission: KX793995
> BO33506.complete
GAAGTTATCAGTCGACATGGGCCGCAGCCGAAGTCCCGCCTCGCCGGCGC
ACAGGAGACGCGAGAAGGAGCGATCCGAGCGGAAGAAGCGCAGGGAGCGC
CGTTCCCGGGAGCGGGAGGCCATCGGAGTAGCGCCAGCCGGAGGATCCGG
ATCTGGAGGCGCCGGTCGCCGCGACCGGGAACGGGATCGCGACCGCAGTC
GCAGCCGAGATCGGGAGCGGGAACGGGAGCGCGACCGTGCGCGGAGTCGG
CGATCTAGATCGCGGTCGAGGGTCGCCGGAGGAGGAGGAGGAGGAGGCGG
CGGCGGAAGCAGCGGCGGCAACAGCAGCTCCGGACCATCGACGTCGCGAA
GGACGACGAGGAACAATGCGGCGGCCACAGCTGCCGACCGGCCCAAGATC
AACGAGGCGGACCTGGAGGGTAAATCGCCGGAAGAGGTCGAGATGCTGAA
GACAATGGGATTCTGCACGTTCGACACCACCAAGAACAGGAAGGTCGAGG
GCAACGATGTCGGAGAAGTGCATGTAATCCTCAAGCGAAAGTACCGCCAG
TACATGAATCGCAAGGGTGGCTTCAACCGGCCGCTCGATTTCGTGGCAGC
AAGCTTTCTAGACCAT
BO33506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:00:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ytr-RB | 585 | CG18426-PB | 1..582 | 17..598 | 2910 | 100 | Plus |
| ytr-RA | 585 | CG18426-PA | 1..582 | 17..598 | 2910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ytr-RB | 2069 | CG18426-RB | 188..770 | 16..598 | 2915 | 100 | Plus |
| ytr-RA | 2076 | CG18426-RA | 195..777 | 16..598 | 2915 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23848460..23848801 | 598..257 | 1710 | 100 | Minus |
| 2R | 25286936 | 2R | 23850571..23850813 | 258..16 | 1215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:00:43 has no hits.
BO33506.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:48 Download gff for
BO33506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ytr-RA | 219..800 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:29 Download gff for
BO33506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ytr-RA | 196..777 | 17..600 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:14 Download gff for
BO33506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ytr-RA | 196..777 | 17..600 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:14 Download gff for
BO33506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23848456..23848799 | 259..600 | 99 | <- | Minus |
| 2R | 23850571..23850812 | 17..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:29 Download gff for
BO33506.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19735979..19736322 | 259..600 | 99 | <- | Minus |
| arm_2R | 19738094..19738335 | 17..258 | 100 | | Minus |
BO33506.pep Sequence
Translation from 16 to 616
> BO33506.pep
MGRSRSPASPAHRRREKERSERKKRRERRSREREAIGVAPAGGSGSGGAG
RRDRERDRDRSRSRDRERERERDRARSRRSRSRSRVAGGGGGGGGGGSSG
GNSSSGPSTSRRTTRNNAAATAADRPKINEADLEGKSPEEVEMLKTMGFC
TFDTTKNRKVEGNDVGEVHVILKRKYRQYMNRKGGFNRPLDFVAASFLDH
BO33506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ytr-PB | 194 | CG18426-PB | 1..194 | 1..194 | 996 | 100 | Plus |
| ytr-PA | 194 | CG18426-PA | 1..194 | 1..194 | 996 | 100 | Plus |
| CG18809-PD | 362 | CG18809-PD | 32..208 | 5..184 | 161 | 31 | Plus |
| CG18809-PC | 362 | CG18809-PC | 32..208 | 5..184 | 161 | 31 | Plus |
| CG18809-PB | 362 | CG18809-PB | 32..208 | 5..184 | 161 | 31 | Plus |
