Clone BO33508 Report

Search the DGRC for BO33508

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:335
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptSmB-RA
Protein status:BO33508.pep: Imported from assembly
Sequenced Size:631

Clone Sequence Records

BO33508.complete Sequence

631 bp assembled on 2012-12-19

GenBank Submission: KX799453

> BO33508.complete
GAAGTTATCAGTCGACATGACGATCGGCAAGAACAACAAAATGATTCAGC
ACCTGAATTATCGGGTGCGAATCGTGCTGCAGGACTCGCGTACCTTCATC
GGTACCTTCAAAGCCTTCGACAAACACATGAACTTGATCCTCGGCGACTG
CGAGGAGTTCCGGAAGATTCGCTCGAAGAATTCCAAGGTGCCCGAGCGCG
AGGAGAAGCGCGTGCTGGGCTTTGTATTGCTGCGCGGCGAGAACATAGTT
TCACTGACGGTGGAGGGACCACCGCCGCCAGAGGAGGGCCTGCCCCGAGT
TCCCATTCCGGGAGCAGCTCCTGGTCCGGGAATCGGTCGCGTGGCCGGAC
GCGGAATGCCTATCAACTTGTCCGCCGTGCCAGCGGGTCTCCAGGGTCCC
GTGAGAGGTGTGGGCGGACCCGCCCAACAGCACATGGCTCCGATGGGACG
AGGAGTGCCACGAGCACCGATGATGGGTGCACCGCCACCGGGCATGATTC
CCGGCGGCATGCCCTCGATGCCAGGAAACATGGGACGCGGTGCTCCGCCA
CCGATGCGCGGACCGCCGCCCAGCATGATCCGTGGAGCACCACCACCGGG
CAGGGGTGGCTATGCAAGCTTTCTAGACCAT

BO33508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
SmB-RB 600 CG5352-PB 1..597 17..613 2985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
SmB-RB 776 CG5352-RB 132..728 17..613 2985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10425531..10426125 613..19 2975 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:00:48 has no hits.

BO33508.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:49 Download gff for BO33508.complete
Subject Subject Range Query Range Percent Splice Strand
SmB-RA 296..892 17..615 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:30 Download gff for BO33508.complete
Subject Subject Range Query Range Percent Splice Strand
SmB-RB 132..728 17..615 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:16 Download gff for BO33508.complete
Subject Subject Range Query Range Percent Splice Strand
SmB-RB 132..728 17..615 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:16 Download gff for BO33508.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10425529..10426126 17..615 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:30 Download gff for BO33508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10425529..10426126 17..615 99   Minus

BO33508.pep Sequence

Translation from 16 to 631

> BO33508.pep
MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRK
IRSKNSKVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGA
APGPGIGRVAGRGMPINLSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRA
PMMGAPPPGMIPGGMPSMPGNMGRGAPPPMRGPPPSMIRGAPPPGRGGYA
SFLDH

BO33508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
SmB-PB 199 CG5352-PB 1..199 1..199 1069 100 Plus