BO33509.complete Sequence
2302 bp assembled on 2013-04-18
GenBank Submission: KX798641
> BO33509.complete
GAAGTTATCAGTCGACATGACCTCCATTATCAAGCTGCACACTATATCTG
GGGCGATGGACGAGTCCCCGCCATGCTATATCCTACAGATAGACGATGTG
CGGATATTACTTGACTGCGGATGGGACGAAAAGTTCGATGCCAACTTTAT
CAAGGAACTGAAGAGGCAGGTGCACACCCTGGACGCCGTGCTGCTATCCC
ATCCGGATGCATATCATCTTGGAGCCCTGCCATACTTGGTGGGCAAGCTG
GGGCTCAATTGCCCCATCTACGCCACCATTCCCGTGTTCAAAATGGGTCA
AATGTTTATGTATGACCTTTACATGTCGCACTTCAATATGGGAGACTTCG
ATCTATTTTCGCTGGACGACGTGGACACGGCTTTCGAAAAGATAACCCAG
TTGAAATACAACCAAACAGTTTCACTGAAGGACAAAGGATATGGAATATC
CATTACGCCTTTGAACGCTGGACACATGATCGGCGGCACCATCTGGAAGA
TCGTCAAGGTGGGCGAGGAGGATATTGTGTACGCCACCGACTTCAACCAT
AAGAAGGAGCGCCACTTAAGTGGCTGCGAGCTGGACAGGCTGCAAAGACC
TTCGCTGCTCATTACCGACGCCTACAACGCACAGTACCAGCAGGCCAGAA
GGAGGGCCCGCGATGAAAAGCTAATGACCAACATCCTGCAAACGGTGCGT
AACAACGGCAATGTCCTGATAGCCGTGGATACGGCAGGACGAGTCCTGGA
GTTGGCCCACATGCTGGACCAGCTGTGGAAGAACAAGGAATCTGGGCTAA
TGGCCTACTCCCTGGCCCTTCTTAACAATGTGAGCTACAACGTGATTGAG
TTCGCCAAGTCGCAGATAGAATGGATGAGTGACAAGCTCACGAAGGCTTT
CGAAGGTGCCCGCAACAATCCCTTTCAGTTCAAGCACATCCAGCTGTGCC
ATTCACTGGCGGACGTCTATAAATTGCCCGCTGGTCCAAAAGTGGTGTTG
GCCAGTACCCCAGATCTGGAGAGCGGATTCACGAGGGATCTCTTCGTGCA
ATGGGCCAGCAATGCCAACAATAGCATAATCCTTACTACTCGTACGTCTC
CCGGCACTTTAGCCATGGAACTGGTGGAGAACTGCGCACCGGGCAAGCAA
ATCGAATTGGACGTCAGGCGAAGAGTTGACTTAGAAGGAGCTGAGTTGGA
GGAGTACCTACGCACACAGGGCGAGAAACTTAATCCCCTTATCGTAAAGC
CCGATGTGGAGGAAGAGAGCAGTTCCGAGTCCGAGGACGACATCGAGATG
AGCGTCATCACGGGCAAGCATGATATTGTGGTCAGACCGGAGGGTCGCCA
TCACTCCGGTTTTTTCAAGTCCAACAAACGACACCACGTGATGTTCCCCT
ATCACGAGGAAAAGGTGAAGTGCGATGAGTATGGGGAGATCATCAATCTA
GACGACTACCGGATTGCGGATGCGACAGGCTATGAGTTTGTACCTATGGA
GGAGCAAAACAAGGAGAATGTTAAAAAGGAAGAACCGGGCATAGGAGCAG
AACAACAGGCTAACGGAGGAATCGTCGACAATGATGTTCAGTTGCTGGAG
AAGCCCACCAAGCTGATAAGCCAACGCAAAACAATCGAGGTGAATGCCCA
AGTCCAGAGGATCGATTTCGAAGGTCGCTCTGATGGCGAGTCCATGCTAA
AGATCCTCTCCCAGTTGAGGCCACGAAGGGTTATCGTCATACACGGCACT
GCCGAAGGCACACAAGTGGTGGCCAGGCACTGCGAACAGAATGTCGGTGC
GCGCGTTTTTACTCCGCAGAAGGGGGAAATCATTGATGTCACCAGTGAGA
TTCACATCTATCAGGTACGCCTGACGGAAGGACTTGTCTCCCAGCTGCAG
TTCCAAAAGGGCAAGGACGCGGAGGTGGCGTGGGTGGATGGTCGCCTGGG
CATGCGGGTGAAGGCCATCGAAGCACCCATGGACGTAACTGTGGAGCAGG
ACGCTTCCGTGCAAGAAGGCAAGACATTGACTCTTGAAACACTGGCGGAC
GATGAGATTCCTATCCACAACTCAGTGCTCATTAACGAGCTGAAACTGTC
CGACTTTAAGCAGACTCTCATGCGTAATAACATCAACTCGGAGTTCTCCG
GCGGCGTGCTCTGGTGCAGCAACGGAACTCTGGCCTTGAGGCGAGTGGAT
GCCGGCAAGGTAGCCATGGAGGGATGCTTATCCGAGGAGTACTACAAGAT
CAGGGAGTTGCTGTACGAGCAGTATGCGATCGTTGCAAGCTTTCTAGACC
AT
BO33509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2271 | CG1957-PA | 1..2268 | 17..2284 | 11340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-RA | 2431 | CG1957-RA | 91..2358 | 17..2284 | 11340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29034869..29036989 | 164..2284 | 10605 | 100 | Plus |
| 3R | 32079331 | 3R | 29034663..29034812 | 17..166 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:16:06 has no hits.
BO33509.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:53:42 Download gff for
BO33509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 61..2328 | 17..2286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:57 Download gff for
BO33509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..2358 | 17..2286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:51 Download gff for
BO33509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpsf100-RA | 91..2358 | 17..2286 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:51 Download gff for
BO33509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29034663..29034811 | 17..165 | 100 | -> | Plus |
| 3R | 29034871..29036989 | 166..2286 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:57 Download gff for
BO33509.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24860385..24860533 | 17..165 | 100 | -> | Plus |
| arm_3R | 24860593..24862711 | 166..2286 | 99 | | Plus |
BO33509.pep Sequence
Translation from 16 to 2302
> BO33509.pep
MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKR
QVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYD
LYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLN
AGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLIT
DAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHML
DQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN
NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNA
NNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRT
QGEKLNPLIVKPDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHHSGFF
KSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKE
NVKKEEPGIGAEQQANGGIVDNDVQLLEKPTKLISQRKTIEVNAQVQRID
FEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTP
QKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKA
IEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT
LMRNNINSEFSGGVLWCSNGTLALRRVDAGKVAMEGCLSEEYYKIRELLY
EQYAIVASFLDH
BO33509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpsf100-PA | 756 | CG1957-PA | 1..756 | 1..756 | 3911 | 100 | Plus |
| IntS11-PA | 597 | CG1972-PA | 4..383 | 5..392 | 359 | 26.5 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 15..370 | 2..366 | 301 | 24.4 | Plus |
| IntS9-PA | 654 | CG5222-PA | 1..428 | 5..362 | 202 | 22.5 | Plus |
