BO33510.complete Sequence
2749 bp assembled on 2013-05-17
GenBank Submission: KX797555
> BO33510.complete
GAAGTTATCAGTCGACATGTTGTCCTGTGCCTCTTTCAATAAACTGATGT
ATCCGTCGGCCGCAGATGTTGCCAAACCGCCAATGGTGGGCTTGGAGGTG
GAAGCTGGATCCATTGGATCCCTGTCCAGTCTTCACGCCCTTCCATCGAC
CACCTCGGTGGGCAGTGGAGCCCCCAGCGAGACGCAGAGCGAGATCTCCT
CCGTGGATAGCGATTGGAGTGACATACGCGCCATCGCCATGAAGTTGGGC
GTTCAAAACCCAGACGATCTCCACACGGAACGTTTCAAGGTGGATCGACA
GAAATTGGAACAGTTAATAAAAGCGGAGAGCTCCATTGAGGGAATGAATG
GAGCTGAATATTTTTTCCATGACATCATGAACACTACGGATACTTATGTG
AGCTGGCCTTGCAGACTCAAAATTGGTGCCAAGAGCAAGAAGGATCCCCA
TGTGCGAATTGTGGGAAAGGTGGATCAGGTTCAGCGGGCAAAGGAGCGCA
TCCTTAGCAGTCTTGACTCCAGGGGCACTCGAGTGATCATGAAAATGGAC
GTCAGCTACACGGATCACTCGTACATCATCGGACGAGGTGGCAACAACAT
CAAGCGCATAATGGACGACACGCATACCCATATCCACTTCCCCGACTCGA
ATCGCTCCAATCCCACGGAGAAATCCAACCAGGTGTCGCTGTGCGGCAGC
CTAGAGGGCGTGGAGCGAGCCCGGGCTCTCGTTCGGCTCTCCACACCGCT
GCTCATCTCCTTCGAGATGCCCGTAATGGGACCCAACAAGCCGCAGCCCG
ACCACGAGACTCCCTACATCAAGATGATCGAGACCAAGTTCAATGTTCAG
GTCATATTCTCCACGCGTCCAAAATTGCATACCTCGCTGGTTTTGGTCAA
GGGATCCGAGAAGGAATCGGCGCAGGTCCGAGATGCCACGCAGCTGCTGA
TCAACTTCGCCTGTGAGAGTATTGCGAGCCAAATCCTGGTGAATGTCCAG
ATGGAGATCTCGCCGCAGCATCACGAAATCGTCAAGGGCAAGAACAACGT
GAATCTGCTGAGCATTATGGAGCGAACCCAGACCAAGATCATATTCCCCG
ATCTGAGCGACATGAACGTGAAGCCCCTGAAGAAGTCCCAGGTCACGATC
AGCGGACGCATCGACGACGTCTACTTGGCGCGACAACAATTGCTTGGCAA
TTTGCCCGTAGCATTGATTTTTGACTTTCCGGACAACCACAACGATGCAT
CCGAAATAATGAGCCTCAACACCAAGTACGGCGTCTACATCACGTTGCGC
CAGAAACAGCGGCAGAGCACCCTGGCCATTGTGGTCAAGGGAGTGGAGAA
GTTTATAGACAAAATCTACGAGGCCCGCCAGGAGATCCTGCGCCTGGCCA
CGCCATTCGTGAAGCCCGAGATCCCCGACTACTACTTCATGCCAAAGGAC
AAAGACCTTAATCTCGCCTACCGCACCCAGTTAACTGCTCTGCTGGCTGG
GTATGTGGACAGCCCGAAGACTCCATCGCTGCTGCCGCCCTCCTTGGCTG
GCCAACTGACGCCCTATGCCAACAACAATCACCTGTTGTTGAACGCCAAT
GGCTTGGCCACGCCCACTGGGGTGTGTGCGCCCACCCAAAAATATATGCA
GTTGCACAACAGCTTCCAACAGGCTCAGAATCGTTCCATGGTGGCTGGTG
GGCAGAGCAACAATGGCAACTATCTGCAGGTTCCTGGAGCGGTGGCGCCG
CCTCTCAAACCGCCGACTGTTTCGCCACGGAACAGCTGCAGTCAGAATAC
CAGTGGTTACCAGAGCTTTAGCAGCAGCACCACCTCCCTGGAGCAGTCGT
ATCCGCCGTATGCCCAATTGCCGGGCACCGTGTCGTCCACTTCATCCTCC
ACCGCGGGAAGCCAAAATCGGGCGCATTATTCGCCAGATTCCACTTACGG
CAGTGAGGGTGGTGGCGTTGGCGGCGGAGGTGGTGGTGGGGCGCGTCTGG
GACGACGCCTTAGCGATGGAGTGCTGCTGGGGCTGAGTAATTCCAACGGT
GGAGGAGGTAACTCCGGAGGAGCCCACCTCCTGCCCGGCAGTGCCGAGAG
CTATCGGAGTTTGCACTATGACCTTGGAGGAAACAAGCACTCCGGCCACC
GTGCCTTTGACTTCGACATGAAACGGGCCCTGGGCTACAAAGCCATGGAG
CGCACCCCGGTGGCAGGGGAGCTGCGAACACCCACGACCGCTTGGATGGG
AATGGGCTTGAGCAGCACCTCGCCCGCCCCTGCCCCGCTGGAGAACGGGG
AAAATGGGGCTGCTGGTGGAGGAGCATCTAGTGGGTGGCGGCTGCCACCA
GGACTGGGTTCCCCTTACGGACTGAGTGCCACCACCGGACTCCTGGACGC
CACTCCAGTCAACCGACGGATGCAGCTAGCCAAGCACAAGGACATCCAGA
CTCTGCTCACCAGTTTGGGTCTGGAGCACTACATCAAAATATTCGTTCTA
AACGAAATCGACCTGGAGGTGTTCACCACCCTGACCGAGGAAAACCTGAT
GGAGCTGGGTATCGCGGCGTTTGGAGCTCGCAAGAAGCTGCTGACGGCCA
TTCACACGCTGCTGGCCAACGAGGCGGCCTGCAGCACAATGCCCAGCAGC
AGCTCCTCGCAGAACTCCTCGTCGCCGCGATTCTCCGGAAGTGCGGCCCC
AGGCGCAGAGCGCCGTCCCTCCAACCAGTGGGCAAGCTTTCTAGACCAT
BO33510.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BicC-RA | 2718 | CG4824-PA | 1..2715 | 17..2731 | 13575 | 100 | Plus |
| BicC-RB | 2718 | CG4824-PB | 1..2715 | 17..2731 | 13575 | 100 | Plus |
| BicC-RD | 2358 | CG4824-PD | 1..2355 | 377..2731 | 11775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45084-RB | 4022 | CG45084-RB | 884..3598 | 17..2731 | 13575 | 100 | Plus |
| CG45084-RA | 3828 | CG45084-RA | 559..3273 | 17..2731 | 13575 | 100 | Plus |
| BicC-RA | 4022 | CG4824-RA | 884..3598 | 17..2731 | 13575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16046599..16047729 | 1356..2486 | 5655 | 100 | Plus |
| 2L | 23513712 | 2L | 16046026..16046408 | 976..1358 | 1915 | 100 | Plus |
| 2L | 23513712 | 2L | 16045065..16045394 | 523..852 | 1650 | 100 | Plus |
| 2L | 23513712 | 2L | 16044055..16044361 | 17..323 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 16047958..16048202 | 2487..2731 | 1225 | 100 | Plus |
| 2L | 23513712 | 2L | 16045836..16045966 | 846..976 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 16044920..16045001 | 443..524 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 16044788..16044857 | 374..443 | 350 | 100 | Plus |
| 2L | 23513712 | 2L | 16044421..16044472 | 322..373 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:37:15 has no hits.
BO33510.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:31:57 Download gff for
BO33510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BicC-RB | 564..3273 | 22..2733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:20 Download gff for
BO33510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BicC-RB | 566..3275 | 22..2733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:21 Download gff for
BO33510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BicC-RA | 889..3598 | 22..2733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:21 Download gff for
BO33510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16045066..16045392 | 524..850 | 100 | -> | Plus |
| 2L | 16045841..16045966 | 851..976 | 100 | -> | Plus |
| 2L | 16044060..16044361 | 22..323 | 100 | -> | Plus |
| 2L | 16044423..16044472 | 324..373 | 100 | -> | Plus |
| 2L | 16044788..16044857 | 374..443 | 100 | -> | Plus |
| 2L | 16044921..16045000 | 444..523 | 100 | -> | Plus |
| 2L | 16046027..16046408 | 977..1358 | 100 | -> | Plus |
| 2L | 16046602..16047729 | 1359..2486 | 100 | -> | Plus |
| 2L | 16047958..16048202 | 2487..2733 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:20 Download gff for
BO33510.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16044060..16044361 | 22..323 | 100 | -> | Plus |
| arm_2L | 16044423..16044472 | 324..373 | 100 | -> | Plus |
| arm_2L | 16044788..16044857 | 374..443 | 100 | -> | Plus |
| arm_2L | 16044921..16045000 | 444..523 | 100 | -> | Plus |
| arm_2L | 16045066..16045392 | 524..850 | 100 | -> | Plus |
| arm_2L | 16045841..16045966 | 851..976 | 100 | -> | Plus |
| arm_2L | 16046027..16046408 | 977..1358 | 100 | -> | Plus |
| arm_2L | 16046602..16047729 | 1359..2486 | 100 | -> | Plus |
| arm_2L | 16047958..16048202 | 2487..2733 | 99 | | Plus |
BO33510.pep Sequence
Translation from 16 to 2749
> BO33510.pep
MLSCASFNKLMYPSAADVAKPPMVGLEVEAGSIGSLSSLHALPSTTSVGS
GAPSETQSEISSVDSDWSDIRAIAMKLGVQNPDDLHTERFKVDRQKLEQL
IKAESSIEGMNGAEYFFHDIMNTTDTYVSWPCRLKIGAKSKKDPHVRIVG
KVDQVQRAKERILSSLDSRGTRVIMKMDVSYTDHSYIIGRGGNNIKRIMD
DTHTHIHFPDSNRSNPTEKSNQVSLCGSLEGVERARALVRLSTPLLISFE
MPVMGPNKPQPDHETPYIKMIETKFNVQVIFSTRPKLHTSLVLVKGSEKE
SAQVRDATQLLINFACESIASQILVNVQMEISPQHHEIVKGKNNVNLLSI
MERTQTKIIFPDLSDMNVKPLKKSQVTISGRIDDVYLARQQLLGNLPVAL
IFDFPDNHNDASEIMSLNTKYGVYITLRQKQRQSTLAIVVKGVEKFIDKI
YEARQEILRLATPFVKPEIPDYYFMPKDKDLNLAYRTQLTALLAGYVDSP
KTPSLLPPSLAGQLTPYANNNHLLLNANGLATPTGVCAPTQKYMQLHNSF
QQAQNRSMVAGGQSNNGNYLQVPGAVAPPLKPPTVSPRNSCSQNTSGYQS
FSSSTTSLEQSYPPYAQLPGTVSSTSSSTAGSQNRAHYSPDSTYGSEGGG
VGGGGGGGARLGRRLSDGVLLGLSNSNGGGGNSGGAHLLPGSAESYRSLH
YDLGGNKHSGHRAFDFDMKRALGYKAMERTPVAGELRTPTTAWMGMGLSS
TSPAPAPLENGENGAAGGGASSGWRLPPGLGSPYGLSATTGLLDATPVNR
RMQLAKHKDIQTLLTSLGLEHYIKIFVLNEIDLEVFTTLTEENLMELGIA
AFGARKKLLTAIHTLLANEAACSTMPSSSSSQNSSSPRFSGSAAPGAERR
PSNQWASFLDH
BO33510.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BicC-PA | 905 | CG4824-PA | 1..905 | 1..905 | 4659 | 100 | Plus |
| BicC-PB | 905 | CG4824-PB | 1..905 | 1..905 | 4659 | 100 | Plus |
| BicC-PD | 785 | CG4824-PD | 1..785 | 121..905 | 4054 | 100 | Plus |
