BO33512.complete Sequence
1291 bp assembled on 2013-05-22
GenBank Submission: KX795677
> BO33512.complete
GAAGTTATCAGTCGACATGGCAGATAAGGCGCAGGAACAAAGTATAATGG
ACAAGTCCATGCGGTCGGTTTTTGTGGGGAACATACCCTACGAGGCCACC
GAGGAGAAGCTAAAGGAGATTTTCAGCGAAGTGGGCCCGGTCTTGTCACT
GAAACTGGTCTTTGATCGGGAAAGTGGCAAACCCAAGGGCTTTGGCTTCT
GCGAGTACAAGGACCAGGAGACGGCTTTAAGTGCCATGCGGAATCTGAAT
GGCTATGAGATCGGCGGCAGAACACTGCGAGTGGACAACGCGTGTACGGA
GAAGTCGCGCATGGAGATGCAGCAGCTGCTTCAGGGACCCCAGGTGGAGA
ATCCCTATGGCGAGCCCTGCGAACCAGAGGATGCTCCCGAGCTCATCACC
AAAACGGTGGCTTCCTTGCCGCCGGAGCAAATGTACGAGCTGATGAAGCA
GATGAAGCTCTGCATCGTGAGCAATCCATCGGAGGCACGCCAGATGCTAA
TGCTCAATCCTCAGTTGGCGTACGCTTTGCTCCAGGCCATGGTGGTTATG
AGGATCGTGGACCCTCAGCAGGCGCTCGGGATGCTCTTCAAGGCCAACCA
AATGCCCCCCGTCTTGGGCGGCAATCCGCACCAGGGGCCGGGGAATCATA
CCATGATGGGTCAGCAACAGGTTCCGCAACAGCAGGTGCAGATCCCGCAG
CAACAGCAACAGGCTCCCCAGCCACCAATGCCCGTTCCCGGACCTGGCTT
CCCGGCCAATGTCCATCCGAACGATATCGATTTGCGCATGGTGCCGGGTG
GACCCATGCCGATGGATCCCAGGATGATGGGCCGTGGCATGGACCAGGAT
TTGCGAGCTTCTCTACCCAATCCAGTGCCACCGCCGCTGATGGATCCCCG
AGCTCGTGCCCAGATGCCCCCACAGCAGCAGCAGGGCGTTCCGCAGGCGC
CACCGGCCCCCTATCCCAGCGATCCGCGCCAGCGTCCCATGGATCCCAGG
TTAAGGGCAGGACCTGGTCCTCAGCAGCAGGCGCCGCCACAAGGAATCCC
CCAAGCGCCGCCACCGACACAACAACAGCAGGCGGCCGCTCAGCAGTTGC
AGAGCAGACTAGGCGCCCATGGAGTCCTGCCCTCGGATGCCTCCGACCAG
GAGAAGGCTGCCCTCATCATGCAGGTACTGCAGCTGTCCGACGAACAGAT
TGCGCAGCTGCCCTCCGAGCAACGGGTCAGTATTGTCATGCTCAAAGAGC
AGATTGCGAAGAGTACCCAGCGCGCAAGCTTTCTAGACCAT
BO33512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-64-RA | 1260 | CG7697-PA | 1..1257 | 17..1273 | 6270 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:43:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-64-RA | 1446 | CG7697-RA | 88..1344 | 17..1273 | 6270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18659905..18661024 | 154..1273 | 5585 | 99.9 | Plus |
| 3R | 32079331 | 3R | 18659705..18659841 | 17..153 | 685 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:43:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6848 | 662..731 | 145 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2207..2352 | 586..722 | 134 | 58.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1130 | 662..731 | 134 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2388 | 662..725 | 133 | 70.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2390 | 662..712 | 129 | 72.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6788 | 662..725 | 124 | 68.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6809 | 662..725 | 124 | 68.8 | Plus |
BO33512.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 15:04:15 Download gff for
BO33512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-64-RA | 314..1570 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:15 Download gff for
BO33512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-64-RA | 314..1570 | 17..1275 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:38 Download gff for
BO33512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CstF-64-RA | 88..1344 | 17..1275 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:38 Download gff for
BO33512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18659705..18659841 | 17..153 | 100 | -> | Plus |
| 3R | 18659905..18661024 | 154..1275 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:15 Download gff for
BO33512.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14485427..14485563 | 17..153 | 100 | -> | Plus |
| arm_3R | 14485627..14486746 | 154..1275 | 99 | | Plus |
BO33512.pep Sequence
Translation from 16 to 1291
> BO33512.pep
MADKAQEQSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFD
RESGKPKGFGFCEYKDQETALSAMRNLNGYEIGGRTLRVDNACTEKSRME
MQQLLQGPQVENPYGEPCEPEDAPELITKTVASLPPEQMYELMKQMKLCI
VSNPSEARQMLMLNPQLAYALLQAMVVMRIVDPQQALGMLFKANQMPPVL
GGNPHQGPGNHTMMGQQQVPQQQVQIPQQQQQAPQPPMPVPGPGFPANVH
PNDIDLRMVPGGPMPMDPRMMGRGMDQDLRASLPNPVPPPLMDPRARAQM
PPQQQQGVPQAPPAPYPSDPRQRPMDPRLRAGPGPQQQAPPQGIPQAPPP
TQQQQAAAQQLQSRLGAHGVLPSDASDQEKAALIMQVLQLSDEQIAQLPS
EQRVSIVMLKEQIAKSTQRASFLDH
BO33512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CstF-64-PA | 419 | CG7697-PA | 1..419 | 1..419 | 2192 | 100 | Plus |
| CG10466-PB | 154 | CG10466-PB | 29..137 | 11..121 | 178 | 37.8 | Plus |
| CG10466-PA | 154 | CG10466-PA | 29..137 | 11..121 | 178 | 37.8 | Plus |
| Caper-PB | 594 | CG11266-PB | 337..422 | 18..104 | 164 | 35.6 | Plus |
| Caper-PA | 594 | CG11266-PA | 337..422 | 18..104 | 164 | 35.6 | Plus |
