BO33514.complete Sequence
1936 bp assembled on 2013-01-22
GenBank Submission: KX796369
> BO33514.complete
GAAGTTATCAGTCGACATGCTGTTCGAGAATCCGGCGGTTGCGGCCAAGT
TGCCCTTTCCGTACAACGTGCCCCCGCCCCTGCAGGCGGCGGCGGCAGCA
GCGGCGGCTGTCCCAAATCTAAGGTTTCAGACACCCATTAAAGCGTTTGC
CTGCCTGACAGCAGCCACAAGGTCAGTATCGGAGATGAACGCCACTTCTC
TATATGCCGGCAATCCCATGGAGAACGCGGCCGCAGCAGCCGCCGCCGCA
GCAGCGGGCTTGATTGATCCGCACCACAATCGCGATCTCCACCAGGCGCT
GGTGGCCTCGATAGCCAATAATAGTGTGGCCGCCATCGGCGGTGGCCTGA
CCACAGCGGCAGTCTTGAAGAGTGCCGCTCAGCAGTCCCAGCAGGCGGTG
CAACAGAACCAGAACGCGGTAGTGGTGACACCGGGACTGGAACAGCCCAA
ACAGGAACCAGCCCAACAGGCGGCACTGGCGCTGCTCAAGGAGAATGTAA
ACGCCTCCGCCGGAGCGGGACAGAACAACGGTCAGGCGGCCATGGGTGGC
AGCAACAAGAGCGGCTCCTCTGGCAGATCCACGCCCAGCCTGAGCGGAGG
CAGTGGCTCCGATCCGGCACCCGGCAAACTCTTTGTCGGCGGTCTCAGCT
GGCAGACGTCGTCTGACAAGCTCAAGGAATACTTCAACATGTTCGGCACC
GTCACCGATGTGCTCATCATGAAGGATCCCGTCACCCAGCGCAGTCGCGG
CTTTGGTTTCATCACATTCCAAGAACCCTGCACCGTGGAGAAGGTTCTCA
AGGTGCCCATTCACACACTCGATGGCAAGAAGATCGATCCCAAGCATGCC
ACCCCAAAGAATCGACCTCGTCAGGCCAACAAGACCAAGAAGATCTTCGT
GGGCGGCGTCTCACAGGATACTTCGGCCGAGGAGGTTAAGGCTTACTTCA
GCCAGTTCGGACCCGTCGAGGAGACGGTTATGTTGATGGACCAGCAGACA
AAGCGCCACCGTGGCTTCGGATTTGTCACCTTTGAGAATGAGGATGTGGT
CGATCGCGTATGTGAGATTCACTTCCACACCATCAAGAACAAGAAGGTCG
AGTGCAAGAAGGCACAGCCCAAGGAAGCAGTCACACCGGCTGCTCAGCTT
CTCCAGAAGCGCATTATGTTGGGCACCCTCGGCGTCCAGCTGCCCACAGC
TCCTGGCCAGCTGATTGGAGCCCGTGGTGCCGGCGTGGCCACCATGAACC
CACTGGCCATGCTTCAAAATCCCACACAGCTACTGCAATCCCCGGCAGCA
GCCGCTGCCGCCCAGCAGGCCGCCCTCATATCACAGAACCCATTTCAAGT
ACAAAACGCCGCTGCGGCAGCCTCGATTGCCAATCAGGCTGGCTTCGGCA
AGCTGTTGACCACATATCCGCAGACTGCGCTGCATAGCGTCAGATATGCA
CCCTACTCGATCCCCGCCAGCGCCGCCACTGCCAACGCCGCCTTGATGCA
GGCTCATCAGGCGCAAAGCGTGGCCGCCGCTGCCCATCATCACCAGCAGC
AGCAACAGCAGCAGCATCATCACCAGCAGCAGACCCACAATGCCCATGTG
GCCGCCGCCCAGCAGCAGCAGCAGAGCCACCACAACGCCGTCTCGAATCC
CGCTTCGCAGGCGCACTCGGCAGCAGCGGCTGCCGCCCTGGCGGCCAATG
CCGCGAATGGGGCAGGTGCCGCTGGAGCCCACAGCCTGGCCGCTGCCGCT
CAGCAAGCTGGCTTAATGGCCGGCAATCCCCTGAATGCCGCTGCTGCCGC
CGCCGCCGCTGCTGCCAATCCGGCGGCTGCCTACTCCAACTATGCGCTGG
CCAACGTGGACATGTCCAGCTTCCAGGGCGTCGATTGGAGCACCATGTAC
GGCATGGGCATGTACGTCGCAAGCTTTCTAGACCAT
BO33514.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RF | 1905 | CG5099-PF | 1..1902 | 17..1918 | 9510 | 100 | Plus |
| msi-RC | 1905 | CG5099-PC | 1..1902 | 17..1918 | 9510 | 100 | Plus |
| msi-RB | 1905 | CG5099-PB | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-RF | 10175 | CG5099-RF | 595..2496 | 17..1918 | 9510 | 100 | Plus |
| msi-RC | 2888 | CG5099-RC | 595..2496 | 17..1918 | 9510 | 100 | Plus |
| msi-RB | 2806 | CG5099-RB | 513..2414 | 17..1918 | 9510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25599504..25600210 | 737..1443 | 3535 | 100 | Plus |
| 3R | 32079331 | 3R | 25595073..25595602 | 210..739 | 2650 | 100 | Plus |
| 3R | 32079331 | 3R | 25600268..25600744 | 1442..1918 | 2385 | 100 | Plus |
| 3R | 32079331 | 3R | 25519623..25519731 | 17..125 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 25564078..25564129 | 122..173 | 260 | 100 | Plus |
| 3R | 32079331 | 3R | 25574882..25574922 | 170..210 | 205 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:12:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6868 | 1524..1636 | 215 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6890 | 1524..1677 | 190 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2427 | 1535..1636 | 188 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6827 | 1535..1636 | 179 | 65 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1160 | 1526..1642 | 178 | 68.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2451 | 1535..1636 | 167 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2499 | 1498..1642 | 163 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6956 | 1535..1664 | 162 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2869 | 1535..1632 | 157 | 62.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..734 | 1622..1529 | 154 | 65.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2529 | 1524..1639 | 132 | 61.2 | Plus |
BO33514.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:56 Download gff for
BO33514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RB | 513..2414 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:58 Download gff for
BO33514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RB | 513..2414 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:11 Download gff for
BO33514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msi-RB | 513..2414 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:11 Download gff for
BO33514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25519623..25519729 | 17..123 | 100 | -> | Plus |
| 3R | 25564080..25564127 | 124..171 | 100 | -> | Plus |
| 3R | 25574884..25574922 | 172..210 | 100 | -> | Plus |
| 3R | 25595074..25595602 | 211..739 | 100 | -> | Plus |
| 3R | 25599507..25600210 | 740..1443 | 100 | -> | Plus |
| 3R | 25600270..25600744 | 1444..1920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:58 Download gff for
BO33514.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21345345..21345451 | 17..123 | 100 | -> | Plus |
| arm_3R | 21389802..21389849 | 124..171 | 100 | -> | Plus |
| arm_3R | 21400606..21400644 | 172..210 | 100 | -> | Plus |
| arm_3R | 21420796..21421324 | 211..739 | 100 | -> | Plus |
| arm_3R | 21425229..21425932 | 740..1443 | 100 | -> | Plus |
| arm_3R | 21425992..21426466 | 1444..1920 | 99 | | Plus |
BO33514.pep Sequence
Translation from 16 to 1936
> BO33514.pep
MLFENPAVAAKLPFPYNVPPPLQAAAAAAAAVPNLRFQTPIKAFACLTAA
TRSVSEMNATSLYAGNPMENAAAAAAAAAAGLIDPHHNRDLHQALVASIA
NNSVAAIGGGLTTAAVLKSAAQQSQQAVQQNQNAVVVTPGLEQPKQEPAQ
QAALALLKENVNASAGAGQNNGQAAMGGSNKSGSSGRSTPSLSGGSGSDP
APGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFIT
FQEPCTVEKVLKVPIHTLDGKKIDPKHATPKNRPRQANKTKKIFVGGVSQ
DTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCE
IHFHTIKNKKVECKKAQPKEAVTPAAQLLQKRIMLGTLGVQLPTAPGQLI
GARGAGVATMNPLAMLQNPTQLLQSPAAAAAAQQAALISQNPFQVQNAAA
AASIANQAGFGKLLTTYPQTALHSVRYAPYSIPASAATANAALMQAHQAQ
SVAAAAHHHQQQQQQQHHHQQQTHNAHVAAAQQQQQSHHNAVSNPASQAH
SAAAAAALAANAANGAGAAGAHSLAAAAQQAGLMAGNPLNAAAAAAAAAA
NPAAAYSNYALANVDMSSFQGVDWSTMYGMGMYVASFLDH
BO33514.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msi-PF | 634 | CG5099-PF | 1..634 | 1..634 | 3204 | 100 | Plus |
| msi-PC | 634 | CG5099-PC | 1..634 | 1..634 | 3204 | 100 | Plus |
| msi-PB | 634 | CG5099-PB | 1..634 | 1..634 | 3204 | 100 | Plus |
| msi-PE | 618 | CG5099-PE | 1..618 | 1..634 | 3095 | 97.5 | Plus |
| msi-PD | 605 | CG5099-PD | 1..605 | 1..634 | 3015 | 95.3 | Plus |
