BO33515.complete Sequence
1939 bp assembled on 2013-05-17
GenBank Submission: KX797073
> BO33515.complete
GAAGTTATCAGTCGACATGGCCACGGCTGAAGCCCAGATCGGTGTGAACA
GGAACTTGCAGAAGCAGGACCTCAGCAACTTGGACGTCTCTAAACTAACG
CCTCTATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCAC
CATCGGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCG
GCGTGCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATC
AAGCTGGAACGCTTGAGCGAAAAAAAAATCAAAAATCTTTTGACCTCCAA
GCAGCAGCGACAGCAGTATGAAATCAAACAGCGTTCAATGCTGCGCCACC
TGGCCGAATTGCGGCGACATAGCCGATTCCGCCGCCTCTGCACCAAGCCA
GCTTCGTCTTCCATGCCAGCATCCACCTCCAGTGTAGATAGACGCACCAC
CCGGCGAAGCACCAGTCAGACCTCACTGAGTCCAAGCAATAGTAGCGGCT
ATGGCAGCGTTTTTGGCTGCGAGGAACATGATGTGGACAAAATACCCAGT
CTCAACGGATTCGCCAAACTGAAGCGTCGACGCAGCAGTTGTGTGGGCGC
CCCAACTCCCAACTCCAAGCGGTCGAAAAATAACATGGGAGTAATTGCCA
AAAGGCCGCCCAAAGGAGAGTACGTTGTGGAGCGTATTGAATGCGTCGAG
ATGGATCAATATCAGCCAGTCTTCTTCGTCAAATGGCTGGGATACCATGA
TAGCGAGAACACCTGGGAAAGTCTTGCCAACGTGGCCGACTGCGCCGAAA
TGGAGAAGTTTGTGGAGCGGCATCAGCAGCTCTACGAGATATACATAGCC
AAGATAACCACTGAGCTTGAGAAGCAGCTGGAGGCATTGCCACTAATGGA
GAACATTACGGTGGCCGAAGTAGACGCCTATGAGCCACTCAATCTGCAGA
TCGATCTTATACTGCTCGCCCAATATCGCGCTGCTGGCAGTCGAAGCCAA
AGGGAACCGCAGAAAATTGGAGAACGAGCCCTGAAAAGCATGCAAATCAA
GCGGGCCCAATTTGTACGACGCAAGCAGTTGGCTGATCTAGCATTGTTCG
AGAAGCGCATGAATCATGTGGAGAAACCGTCACCGCCAATACGTGTTGAG
AACAACATTGATCTGGACACCATAGACAGCAATTTCATGTACATACATGA
TAACATAATCGGCAAGGATGTGCCCAAGCCGGAAGCGGGGATTGTGGGCT
GTAAGTGCACTGAAGACACAGAGGAGTGTACTGCCTCTACGAAGTGTTGT
GCCCGCTTCGCCGGCGAGCTGTTCGCCTACGAGCGAAGCACACGGCGCTT
GCGCCTTCGTCCCGGAAGTGCCATCTATGAGTGCAATAGCCGCTGCTCGT
GCGATTCAAGCTGCTCCAACCGTCTGGTGCAGCACGGACGCCAGGTACCG
TTGGTGCTGTTTAAGACCGCCAACGGCAGCGGATGGGGGGTGCGAGCCGC
AACTGCCTTGCGTAAGGGTGAATTTGTGTGCGAGTACATTGGAGAGATCA
TCACCAGCGATGAGGCAAATGAGCGCGGCAAGGCGTATGACGACAATGGG
AGGACATATCTGTTCGACTTGGATTACAACACAGCTCAGGATAGCGAGTA
CACTATCGATGCAGCTAACTATGGCAACATCTCGCACTTTATCAATCACT
CTTGCGATCCTAATCTCGCCGTGTTCCCCTGTTGGATCGAGCACCTGAAT
GTCGCGCTGCCGCACCTCGTGTTCTTCACACTGCGTCCAATCAAGGCGGG
CGAGGAGTTGAGCTTCGACTACATTCGCGCGGACAACGAAGATGTGCCCT
ACGAGAACCTCTCGACAGCTGTGCGTGTCGAGTGCCGCTGCGGAGCTGAT
AATTGCAGAAAGGTCCTCTTTGCAAGCTTTCTAGACCAT
BO33515.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-9-RA | 1908 | CG43664-PA | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| eIF-2gamma-RD | 1428 | CG43665-PD | 1..241 | 17..257 | 1205 | 100 | Plus |
| eIF-2gamma-RB | 1428 | CG43665-PB | 1..241 | 17..257 | 1205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-9-RA | 2386 | CG43664-RA | 110..2016 | 15..1921 | 9535 | 100 | Plus |
| eIF-2gamma-RD | 2062 | CG43665-RD | 110..352 | 15..257 | 1215 | 100 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 110..352 | 15..257 | 1215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15260234..15261898 | 1921..257 | 8325 | 100 | Minus |
| 3R | 32079331 | 3R | 15262547..15262722 | 257..82 | 880 | 100 | Minus |
| 3R | 32079331 | 3R | 15263281..15263349 | 83..15 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:37:18 has no hits.
BO33515.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:31:58 Download gff for
BO33515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RA | 128..2032 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:23 Download gff for
BO33515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RA | 112..2016 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:22 Download gff for
BO33515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RA | 112..2016 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:22 Download gff for
BO33515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15260231..15261897 | 258..1923 | 99 | <- | Minus |
| 3R | 15262547..15262721 | 83..257 | 100 | <- | Minus |
| 3R | 15263282..15263347 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:23 Download gff for
BO33515.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11085953..11087619 | 258..1923 | 99 | <- | Minus |
| arm_3R | 11088269..11088443 | 83..257 | 100 | <- | Minus |
| arm_3R | 11089004..11089069 | 17..82 | 100 | | Minus |
BO33515.pep Sequence
Translation from 16 to 1939
> BO33515.pep
MATAEAQIGVNRNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVA
HGKSTVVKAISGVQTVRFKNELERNITIKLERLSEKKIKNLLTSKQQRQQ
YEIKQRSMLRHLAELRRHSRFRRLCTKPASSSMPASTSSVDRRTTRRSTS
QTSLSPSNSSGYGSVFGCEEHDVDKIPSLNGFAKLKRRRSSCVGAPTPNS
KRSKNNMGVIAKRPPKGEYVVERIECVEMDQYQPVFFVKWLGYHDSENTW
ESLANVADCAEMEKFVERHQQLYEIYIAKITTELEKQLEALPLMENITVA
EVDAYEPLNLQIDLILLAQYRAAGSRSQREPQKIGERALKSMQIKRAQFV
RRKQLADLALFEKRMNHVEKPSPPIRVENNIDLDTIDSNFMYIHDNIIGK
DVPKPEAGIVGCKCTEDTEECTASTKCCARFAGELFAYERSTRRLRLRPG
SAIYECNSRCSCDSSCSNRLVQHGRQVPLVLFKTANGSGWGVRAATALRK
GEFVCEYIGEIITSDEANERGKAYDDNGRTYLFDLDYNTAQDSEYTIDAA
NYGNISHFINHSCDPNLAVFPCWIEHLNVALPHLVFFTLRPIKAGEELSF
DYIRADNEDVPYENLSTAVRVECRCGADNCRKVLFASFLDH
BO33515.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:16:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)3-9-PA | 635 | CG43664-PA | 1..635 | 1..635 | 3304 | 100 | Plus |
| eIF-2gamma-PD | 475 | CG43665-PD | 1..89 | 1..89 | 390 | 92.1 | Plus |
| eIF-2gamma-PB | 475 | CG43665-PB | 1..89 | 1..89 | 390 | 92.1 | Plus |
| G9a-PA | 1637 | CG2995-PA | 1360..1600 | 378..631 | 313 | 32 | Plus |
| G9a-PB | 1657 | CG2995-PB | 1380..1620 | 378..631 | 313 | 32 | Plus |
