Clone BO33516 Report

Search the DGRC for BO33516

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:335
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptRm62-RA
Protein status:BO33516.pep: Imported from assembly
Sequenced Size:2191

Clone Sequence Records

BO33516.complete Sequence

2191 bp assembled on 2013-04-18

GenBank Submission: KX799553

> BO33516.complete
GAAGTTATCAGTCGACATGCTTAAGCTTGTGCAATACATAGCCCCCCGGG
TGGGCGGCGCCACGCCCCGACCGACTGCCTGCGGCTGGGGCAACTTGCTA
TTGATTTCCCCGAGAAGTGGCGCGAGCTCCGAGAAATGTATAACGCAACG
TCGCCATTTTCTTTTCTCCTCCGCCAGCAGCAGCGGCACTTTCGCTTCTT
CTTCTTCGCTCTGCACCGAACAACGACAACAGTTCCACGGGAGTCGCAGG
AATCGTGAGACAATACTGTTCCCAAGCACATATAGTAGTCTCCAAGCTCA
GTCGCAGCGTGCGTTTCGAGACAGCTCGAAACCAGATTCAGACGACTACG
TAGATTCCATCCCGAAAGCAGAGCAGCGGACGAGGACGAGGAAATCGCTT
TTCAACGATCCCGACGAAAGAACTGAGGAAATCAAAATTGAAGGAGTAAT
GGCACCACACGATCGCGACTTTGGTCACAGTGGACGTGGCGGTCGCGGAG
GCGATCGAGGCGGCGATGATCGGCGAGGAGGCGGCGGCGGAGGCAATCGC
TTCGGTGGCGGCGGTGGCGGTGGCGATTACCACGGCATAAGGAATGGACG
CGTCGAGAAGCGACGCGATGACCGCGGAGGCGGCAACCGATTTGGAGGTG
GTGGTGGATTCGGGGATCGCCGAGGAGGAGGTGGCGGCGGCAGCCAAGAC
CTCCCCATGCGTCCGGTCGACTTCTCCAACCTGGCTCCCTTCAAGAAGAA
CTTTTACCAGGAGCACCCTAACGTAGCAAACCGATCGCCCTACGAAGTTC
AGAGGTATCGCGAAGAGCAGGAGATCACCGTGCGCGGACAGGTGCCGAAC
CCCATCCAGGACTTCTCCGAGGTCCATCTGCCCGACTACGTCATGAAGGA
GATCCGCCGACAGGGCTACAAGGCCCCCACCGCTATCCAAGCGCAGGGCT
GGCCTATCGCCATGAGTGGCTCGAACTTCGTCGGCATTGCCAAGACGGGA
TCCGGAAAGACCCTGGGCTACATCCTGCCCGCTATTGTCCACATCAACAA
CCAGCAGCCGCTGCAGAGGGGCGACGGACCTATCGCCCTCGTGCTGGCCC
CCACTCGGGAGCTGGCCCAACAGATCCAGCAGGTGGCCACCGAATTCGGT
TCCTCGTCGTATGTTCGCAACACCTGCGTCTTCGGCGGCGCCCCGAAGGG
CGGCCAAATGCGGGATCTGCAGCGCGGCTGCGAGATCGTCATTGCCACAC
CCGGACGTCTTATTGATTTCCTCTCCGCCGGCTCTACTAACCTGAAGCGT
TGCACCTACTTGGTGCTGGACGAGGCCGATCGCATGTTAGACATGGGCTT
CGAGCCCCAGATCAGAAAGATCGTCTCACAGATCCGGCCCGACCGACAGA
CGCTCATGTGGAGCGCTACCTGGCCCAAGGAGGTCAAGCAGCTTGCCGAG
GACTTTTTGGGCAACTACATCCAGATCAACATTGGATCGCTGGAGCTGTC
CGCCAATCACAACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCA
AGGAGGAGAAATTGAAGACCCTCCTGTCAGACATCTACGACACCAGCGAG
AGCCCCGGCAAGATTATCATATTCGTGGAGACAAAGCGACGCGTGGACAA
CCTGGTGCGCTTCATCCGCAGCTTCGGAGTCCGTTGTGGAGCTATTCACG
GTGACAAGTCGCAATCAGAACGAGACTTTGTGCTCCGTGAGTTCCGCTCG
GGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGACTAGA
CGTGGACGGCATCAAGTATGTCATCAACTTTGACTACCCGCAAAACAGCG
AGGACTACATCCATCGCATCGGTCGCACAGGACGATCCAACACAAAGGGC
ACCTCTTTCGCCTTCTTCACCAAGAACAATGCCAAGCAAGCCAAGGCGCT
GGTCGACGTACTCCGAGAAGCTAATCAGGAAATCAATCCTGCCCTGGAAA
ATCTGGCCCGCAACTCGCGCTACGACGGTGGCGGCGGACGCTCCCGTTAT
GGAGGCGGTGGCGGCGGCGGTCGCTTCGGCGGCGGCGGCTTCAAGAAGGG
CAGCCTGAGCAACGGACGAGGCTTCGGAGGAGGCGGCGGCGGCGGCGGCG
AAGGCAGACACTCGCGCTTCGACGCAAGCTTTCTAGACCAT

BO33516.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RA 2160 CG10279-PA 1..2157 17..2173 10785 100 Plus
Rm62-RH 1728 CG10279-PH 1..1725 449..2173 8625 100 Plus
Rm62-RF 1737 CG10279-PF 10..1734 449..2173 8625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RA 2995 CG10279-RA 104..2260 17..2173 10785 100 Plus
Rm62-RH 2760 CG10279-RH 28..2025 176..2173 9990 100 Plus
Rm62-RD 2757 CG10279-RD 28..2022 179..2173 9975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6004017..6005126 1560..451 5550 100 Minus
3R 32079331 3R 6008036..6008470 451..17 2175 100 Minus
3R 32079331 3R 6003673..6003911 1799..1561 1195 100 Minus
3R 32079331 3R 6001166..6001365 2173..1974 1000 100 Minus
3R 32079331 3R 6001557..6001739 1979..1797 915 100 Minus
X 23542271 X 7928923..7929222 1522..1223 420 76 Minus
X 23542271 X 7929323..7929525 1128..926 295 76.4 Minus
Blast to na_te.dros performed on 2014-11-28 13:17:31 has no hits.

BO33516.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:03:45 Download gff for BO33516.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 104..2260 17..2175 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:37 Download gff for BO33516.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 104..2260 17..2175 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:24 Download gff for BO33516.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 104..2260 17..2175 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:24 Download gff for BO33516.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6001164..6001360 1979..2175 98 <- Minus
3R 6001558..6001736 1800..1978 100 <- Minus
3R 6003673..6003911 1561..1799 100 <- Minus
3R 6004017..6005126 451..1560 100 <- Minus
3R 6008037..6008470 17..450 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:37 Download gff for BO33516.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1826886..1827082 1979..2175 98 <- Minus
arm_3R 1827280..1827458 1800..1978 100 <- Minus
arm_3R 1829395..1829633 1561..1799 100 <- Minus
arm_3R 1829739..1830848 451..1560 100 <- Minus
arm_3R 1833759..1834192 17..450 100   Minus

BO33516.pep Sequence

Translation from 16 to 2191

> BO33516.pep
MLKLVQYIAPRVGGATPRPTACGWGNLLLISPRSGASSEKCITQRRHFLF
SSASSSGTFASSSSLCTEQRQQFHGSRRNRETILFPSTYSSLQAQSQRAF
RDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDPDERTEEIKIEGVMAPHDR
DFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRR
DDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFKKNFYQEH
PNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQG
YKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ
RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRD
LQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIR
KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNI
RQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFI
RSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIK
YVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLR
EANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKKGSLSNG
RGFGGGGGGGGEGRHSRFDASFLDH

BO33516.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-PA 719 CG10279-PA 1..719 1..719 3784 100 Plus
Rm62-PF 578 CG10279-PF 3..578 144..719 3047 99.8 Plus
Rm62-PB 578 CG10279-PB 3..578 144..719 3047 99.8 Plus
Rm62-PC 578 CG10279-PC 3..578 144..719 3047 99.8 Plus
Rm62-PH 575 CG10279-PH 1..575 145..719 3046 100 Plus