BO33516.complete Sequence
2191 bp assembled on 2013-04-18
GenBank Submission: KX799553
> BO33516.complete
GAAGTTATCAGTCGACATGCTTAAGCTTGTGCAATACATAGCCCCCCGGG
TGGGCGGCGCCACGCCCCGACCGACTGCCTGCGGCTGGGGCAACTTGCTA
TTGATTTCCCCGAGAAGTGGCGCGAGCTCCGAGAAATGTATAACGCAACG
TCGCCATTTTCTTTTCTCCTCCGCCAGCAGCAGCGGCACTTTCGCTTCTT
CTTCTTCGCTCTGCACCGAACAACGACAACAGTTCCACGGGAGTCGCAGG
AATCGTGAGACAATACTGTTCCCAAGCACATATAGTAGTCTCCAAGCTCA
GTCGCAGCGTGCGTTTCGAGACAGCTCGAAACCAGATTCAGACGACTACG
TAGATTCCATCCCGAAAGCAGAGCAGCGGACGAGGACGAGGAAATCGCTT
TTCAACGATCCCGACGAAAGAACTGAGGAAATCAAAATTGAAGGAGTAAT
GGCACCACACGATCGCGACTTTGGTCACAGTGGACGTGGCGGTCGCGGAG
GCGATCGAGGCGGCGATGATCGGCGAGGAGGCGGCGGCGGAGGCAATCGC
TTCGGTGGCGGCGGTGGCGGTGGCGATTACCACGGCATAAGGAATGGACG
CGTCGAGAAGCGACGCGATGACCGCGGAGGCGGCAACCGATTTGGAGGTG
GTGGTGGATTCGGGGATCGCCGAGGAGGAGGTGGCGGCGGCAGCCAAGAC
CTCCCCATGCGTCCGGTCGACTTCTCCAACCTGGCTCCCTTCAAGAAGAA
CTTTTACCAGGAGCACCCTAACGTAGCAAACCGATCGCCCTACGAAGTTC
AGAGGTATCGCGAAGAGCAGGAGATCACCGTGCGCGGACAGGTGCCGAAC
CCCATCCAGGACTTCTCCGAGGTCCATCTGCCCGACTACGTCATGAAGGA
GATCCGCCGACAGGGCTACAAGGCCCCCACCGCTATCCAAGCGCAGGGCT
GGCCTATCGCCATGAGTGGCTCGAACTTCGTCGGCATTGCCAAGACGGGA
TCCGGAAAGACCCTGGGCTACATCCTGCCCGCTATTGTCCACATCAACAA
CCAGCAGCCGCTGCAGAGGGGCGACGGACCTATCGCCCTCGTGCTGGCCC
CCACTCGGGAGCTGGCCCAACAGATCCAGCAGGTGGCCACCGAATTCGGT
TCCTCGTCGTATGTTCGCAACACCTGCGTCTTCGGCGGCGCCCCGAAGGG
CGGCCAAATGCGGGATCTGCAGCGCGGCTGCGAGATCGTCATTGCCACAC
CCGGACGTCTTATTGATTTCCTCTCCGCCGGCTCTACTAACCTGAAGCGT
TGCACCTACTTGGTGCTGGACGAGGCCGATCGCATGTTAGACATGGGCTT
CGAGCCCCAGATCAGAAAGATCGTCTCACAGATCCGGCCCGACCGACAGA
CGCTCATGTGGAGCGCTACCTGGCCCAAGGAGGTCAAGCAGCTTGCCGAG
GACTTTTTGGGCAACTACATCCAGATCAACATTGGATCGCTGGAGCTGTC
CGCCAATCACAACATCCGCCAGGTGGTGGACGTTTGTGACGAGTTCAGCA
AGGAGGAGAAATTGAAGACCCTCCTGTCAGACATCTACGACACCAGCGAG
AGCCCCGGCAAGATTATCATATTCGTGGAGACAAAGCGACGCGTGGACAA
CCTGGTGCGCTTCATCCGCAGCTTCGGAGTCCGTTGTGGAGCTATTCACG
GTGACAAGTCGCAATCAGAACGAGACTTTGTGCTCCGTGAGTTCCGCTCG
GGCAAGTCCAACATTCTGGTGGCCACCGATGTGGCGGCCCGTGGACTAGA
CGTGGACGGCATCAAGTATGTCATCAACTTTGACTACCCGCAAAACAGCG
AGGACTACATCCATCGCATCGGTCGCACAGGACGATCCAACACAAAGGGC
ACCTCTTTCGCCTTCTTCACCAAGAACAATGCCAAGCAAGCCAAGGCGCT
GGTCGACGTACTCCGAGAAGCTAATCAGGAAATCAATCCTGCCCTGGAAA
ATCTGGCCCGCAACTCGCGCTACGACGGTGGCGGCGGACGCTCCCGTTAT
GGAGGCGGTGGCGGCGGCGGTCGCTTCGGCGGCGGCGGCTTCAAGAAGGG
CAGCCTGAGCAACGGACGAGGCTTCGGAGGAGGCGGCGGCGGCGGCGGCG
AAGGCAGACACTCGCGCTTCGACGCAAGCTTTCTAGACCAT
BO33516.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RA | 2160 | CG10279-PA | 1..2157 | 17..2173 | 10785 | 100 | Plus |
Rm62-RH | 1728 | CG10279-PH | 1..1725 | 449..2173 | 8625 | 100 | Plus |
Rm62-RF | 1737 | CG10279-PF | 10..1734 | 449..2173 | 8625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-RA | 2995 | CG10279-RA | 104..2260 | 17..2173 | 10785 | 100 | Plus |
Rm62-RH | 2760 | CG10279-RH | 28..2025 | 176..2173 | 9990 | 100 | Plus |
Rm62-RD | 2757 | CG10279-RD | 28..2022 | 179..2173 | 9975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6004017..6005126 | 1560..451 | 5550 | 100 | Minus |
3R | 32079331 | 3R | 6008036..6008470 | 451..17 | 2175 | 100 | Minus |
3R | 32079331 | 3R | 6003673..6003911 | 1799..1561 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 6001166..6001365 | 2173..1974 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 6001557..6001739 | 1979..1797 | 915 | 100 | Minus |
X | 23542271 | X | 7928923..7929222 | 1522..1223 | 420 | 76 | Minus |
X | 23542271 | X | 7929323..7929525 | 1128..926 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:17:31 has no hits.
BO33516.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:03:45 Download gff for
BO33516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RA | 104..2260 | 17..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:37 Download gff for
BO33516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RA | 104..2260 | 17..2175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:24 Download gff for
BO33516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rm62-RA | 104..2260 | 17..2175 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:24 Download gff for
BO33516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6001164..6001360 | 1979..2175 | 98 | <- | Minus |
3R | 6001558..6001736 | 1800..1978 | 100 | <- | Minus |
3R | 6003673..6003911 | 1561..1799 | 100 | <- | Minus |
3R | 6004017..6005126 | 451..1560 | 100 | <- | Minus |
3R | 6008037..6008470 | 17..450 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:37 Download gff for
BO33516.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1826886..1827082 | 1979..2175 | 98 | <- | Minus |
arm_3R | 1827280..1827458 | 1800..1978 | 100 | <- | Minus |
arm_3R | 1829395..1829633 | 1561..1799 | 100 | <- | Minus |
arm_3R | 1829739..1830848 | 451..1560 | 100 | <- | Minus |
arm_3R | 1833759..1834192 | 17..450 | 100 | | Minus |
BO33516.pep Sequence
Translation from 16 to 2191
> BO33516.pep
MLKLVQYIAPRVGGATPRPTACGWGNLLLISPRSGASSEKCITQRRHFLF
SSASSSGTFASSSSLCTEQRQQFHGSRRNRETILFPSTYSSLQAQSQRAF
RDSSKPDSDDYVDSIPKAEQRTRTRKSLFNDPDERTEEIKIEGVMAPHDR
DFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNGRVEKRR
DDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFKKNFYQEH
PNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMKEIRRQG
YKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ
RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRD
LQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIR
KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNI
RQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFI
RSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIK
YVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLR
EANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKKGSLSNG
RGFGGGGGGGGEGRHSRFDASFLDH
BO33516.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rm62-PA | 719 | CG10279-PA | 1..719 | 1..719 | 3784 | 100 | Plus |
Rm62-PF | 578 | CG10279-PF | 3..578 | 144..719 | 3047 | 99.8 | Plus |
Rm62-PB | 578 | CG10279-PB | 3..578 | 144..719 | 3047 | 99.8 | Plus |
Rm62-PC | 578 | CG10279-PC | 3..578 | 144..719 | 3047 | 99.8 | Plus |
Rm62-PH | 575 | CG10279-PH | 1..575 | 145..719 | 3046 | 100 | Plus |