BO33517.complete Sequence
2944 bp assembled on 2013-01-22
GenBank Submission: KX798191
> BO33517.complete
GAAGTTATCAGTCGACATGACGGTAAACAAACGCGACGCGGGTGCGACGC
GACCGCGGTGCTTCTTTGACATTTCCCTGGGCGGCCTGGGCATGGGCCGC
ATTGTCTTCGAGCTCTTCAACGATGTGGCGCCCAAAACGGCCGAAAATTT
CCGCGCACTCTGCACGGGCGAAAAGGGATTTGGCCTAATCACCGGCAAGA
AGCTGCAGTACAAGGGTGTGATATTCCACCGGGTGGTCAAGGACTTCATG
GTCCAGGCGGGCGACTTCTCTGCGGGCAACGGCACCGGCGGCGAGTCCAT
CTACGGCGGGACGTTCGAGGATGAGAGCTTCGAAAAGAAGCACGATCGTC
CCTTCCTGCTGTCGATGGCCAACCGGGGCAAGAACACAAATGGCTCGCAG
TTCTTTATTACAACACAGCCTGCGCCACATTTGGACAATATCCATGTTGT
ATTCGGCCAAGTTATATCCGGTCAGGAGTTGGTGCGCCAATTGGAGGGCT
TGCCTGTCGATCGGAACTCACGCCCGCTGCAGGATGCAGCCATTGCCAAC
TGCGGTGAACTAGTTAGACAGACAAAGGCCAAAAAGGAGAAGAAGCACAA
GAGGCGCTCCACGGCCACCGAAGATTCAAACAGCGAGGAAAGTGAGGCTG
AAGCAAAGGTCGTGCGCAAGGCCAAGAAGAAAAAACGCAGCCGCAAAGAT
ACGAAGTCGCAAAGCGATAGCGAAGACAATGAAACAAGTCGCGGGAATGG
AAAACATGACCAGACCCCGCAGGATGATGACGAGGACCGCGAGGAAGGCG
AACTGCATCCGCTGGTCACAATTACAAAGATAGATCCTAACGAGATACCA
GAGGTATCGAACAAATTCCTAATGCGCGCAGAGCGATCAAAGTCGCTGGA
TCGTGAGGAGCGTGGAGCACGCGGGCAGGATCGTGATCGAGGCAAAGATC
AGGATCGAGACCGCAGCCGTAACAATTTCGGTTGGTCAAAGAAGCAGGCA
CCGCCTACATCGCGTAGTGGTCGCATTGTCAAAGGACGCGGAGTGTTTCG
CTTTCGCACCCCGTCGCGTAGTCGTTCGCGCAGCACTACGCCACCTCACT
GGAAGCATGCCCAGAAGCGCACCATCAAGTTGTCCGACTTGGAGCGCATT
GAGGAGGAGAGCAAGATGCGCGAGGAGGAGATGAAGCGGCGCGAGCATGA
GAGAAAGCGTCGCCACGAGGAGGCCACAAAGAATCCTAAGCAGTCCTTTT
TCGAGCTATCCCATGCCAGCACTTACGGTGGCAAAATAACTCCGGATCGA
TTCTCTCCAGAGCACAAAGCCAAGTCGAAGGACACCGCAGACCGCGGTAA
AGCCAAGGAGAGAGAAAAGGCTGGCGAGAAGGATAAGGCTAGGGATGTGA
CTCCTGTAAAACGCCGCAAGTCGATGGACATGAACGCCTTGGACTACGAG
CAGCAGACAGAATCCGAAGTCGAGTCCGAGGACGAGGAGCAGTTGAAGGT
GAAACCACCAAGCAAGCAGGATATCAGAGTGGAGCCATCGACCAGCAAGG
ATCGCAACGCGAAACGCGATGAGCGCAAGCCCACCGAGGAGAAGGCCAAG
CCAAAGCGCAGCCGTTCCCGGAGCCCTCGTCGCCAATCTCCTGCTCGTCG
TCAGCAACGCTCGCCTGCCCGACGTCCTGGCCAAAACTACAACCAAAACC
AGAATCAGAATCAAAATCAGAATCAGAATCAGAATCAGCTTAATCGTGGC
AATCGCCGAAATCCCTTCGCGGACAGAGATCGCCGCCGTCGCTCGCGCTC
TCAGGATAATGAGTACCGCAATCGTTACCCCCTGTCACCAATCAGAGGAA
GAGGCTCGCCCAGTGGAGACCGCCGGCGTCAGCAGCGCTCCCGCAGTCAG
AACCGTAGGCAGGATTCACCCAGCCAGAGGCGTCAGTTGTCGCCGGGCCG
AAAACGTCAGGATTCGCCGAGTAAGAAGCGTCCCAATTCAACGGAAAGAA
AGTGGCGTGACTCGCCTGAAAGAAAGCGAGACGATTCACACGACAGGAAG
CGGGAGGCTTCTCCCAACTGGAAGCGTGACGATTCACCTGCAAGGAAGCG
CAAGGACTCCGCCAATAGAAAGCGGGAGGATTCCCAAGACAAAAAGATAC
AGGACAGCAAAAGGCAGGAGGATTCTGCGGGTAAGAAACGAGAGGATAGC
CCGAGCAAAAAGCGAAAGGATTCTGATAAGAAGCGTCAGGATTCTCCTGT
GAAAAGACAAGAATCACCAGGCAGAAAGCGTCAGGACTCGCCGGAAAGGA
AACGCAGGGACTCGCCTGACAGAAGGCGCAAGGATTCACCGGCCAGACGA
CGCCAGGAATCTTCTGGCAGAAGGCGCCAGGACTCCGATGGCAGAAGACG
CCGTGAATCGTCCGGCAACAGGCGCAGTCGCAGCCGTGGACGTTGGCACA
GTTCCTCGCGCAGTCGCAGTCCCTCAACTAGTCGCTCTCGCCGCCGTCGC
TCGCGCAGTCCGCTGCCCAAGCTCACCTCCGCGCTGCCCATGAGCGAGGA
GCGCGAGAAGGCGGCCCGCGAGAAGATGCAGAAGCGTGCGGAGGCCGCCA
TGCTGATGAAGGAGCACATGCGCAACGAGATCGCCAAGGAGGAGGAACGC
CGCATGGAGAAGCAGCGCCAGGACGACTTGGATAAGGAGCGCACCACCCG
CGAGCTCAACGAACTGGAGCGCCTGAAGGCCGAGACGCTCAGGAAGCTGC
ATGAAGAGGATTCCGTGGACCCGGATGCGGCTGCATCCGCCGGAAGTGCG
TCCAAAACCGATGCCACCAGCACCGGCGCCAAGAGCAAACGCGATTCCAG
CTCAGAGAATCGGCATCGCGAAAAGAAGCGCAAGCATAAGAAGTCCAAAA
AGTCCTCGGGTCGATCCGATAACGATGCAAGCTTTCTAGACCAT
BO33517.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RA | 2913 | CG1866-PA | 1..2910 | 17..2926 | 14520 | 99.9 | Plus |
| Moca-cyp-RC | 2058 | CG1866-PC | 1..2055 | 872..2926 | 10260 | 100 | Plus |
| Moca-cyp-RB | 2058 | CG1866-PB | 1..2055 | 872..2926 | 10260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-RA | 3168 | CG1866-RA | 102..3011 | 17..2926 | 14520 | 99.9 | Plus |
| Moca-cyp-RC | 3893 | CG1866-RC | 1219..3736 | 409..2926 | 12575 | 100 | Plus |
| Moca-cyp-RB | 3726 | CG1866-RB | 1052..3569 | 409..2926 | 12575 | 100 | Plus |
| Moca-cyp-RC | 3893 | CG1866-RC | 102..493 | 17..408 | 1945 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28343135..28345012 | 1049..2926 | 9375 | 99.9 | Plus |
| 3R | 32079331 | 3R | 28340435..28340743 | 17..325 | 1515 | 99.4 | Plus |
| 3R | 32079331 | 3R | 28342878..28343074 | 852..1048 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 28342478..28342626 | 578..726 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 28342280..28342419 | 439..578 | 700 | 100 | Plus |
| 3R | 32079331 | 3R | 28342683..28342812 | 727..856 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 28341371..28341459 | 320..408 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 22645337..22645518 | 405..224 | 250 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:12:09 has no hits.
BO33517.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:57 Download gff for
BO33517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 98..3007 | 17..2928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:00 Download gff for
BO33517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 102..3011 | 17..2928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:13 Download gff for
BO33517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Moca-cyp-RA | 102..3011 | 17..2928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:13 Download gff for
BO33517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28342880..28343074 | 854..1048 | 100 | -> | Plus |
| 3R | 28341372..28341459 | 321..408 | 100 | -> | Plus |
| 3R | 28342185..28342214 | 409..438 | 100 | -> | Plus |
| 3R | 28342280..28342419 | 439..578 | 100 | -> | Plus |
| 3R | 28342479..28342626 | 579..726 | 100 | -> | Plus |
| 3R | 28342683..28342809 | 727..853 | 100 | -> | Plus |
| 3R | 28340435..28340738 | 17..320 | 99 | -> | Plus |
| 3R | 28343135..28345012 | 1049..2928 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:00 Download gff for
BO33517.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24166157..24166460 | 17..320 | 99 | -> | Plus |
| arm_3R | 24167094..24167181 | 321..408 | 100 | -> | Plus |
| arm_3R | 24167907..24167936 | 409..438 | 100 | -> | Plus |
| arm_3R | 24168002..24168141 | 439..578 | 100 | -> | Plus |
| arm_3R | 24168201..24168348 | 579..726 | 100 | -> | Plus |
| arm_3R | 24168405..24168531 | 727..853 | 100 | -> | Plus |
| arm_3R | 24168602..24168796 | 854..1048 | 100 | -> | Plus |
| arm_3R | 24168857..24170734 | 1049..2928 | 99 | | Plus |
BO33517.pep Sequence
Translation from 16 to 2944
> BO33517.pep
MTVNKRDAGATRPRCFFDISLGGLGMGRIVFELFNDVAPKTAENFRALCT
GEKGFGLITGKKLQYKGVIFHRVVKDFMVQAGDFSAGNGTGGESIYGGTF
EDESFEKKHDRPFLLSMANRGKNTNGSQFFITTQPAPHLDNIHVVFGQVI
SGQELVRQLEGLPVDRNSRPLQDAAIANCGELVRQTKAKKEKKHKRRSTA
TEDSNSEESEAEAKVVRKAKKKKRSRKDTKSQSDSEDNETSRGNGKHDQT
PQDDDEDREEGELHPLVTITKIDPNEIPEVSNKFLMRAERSKSLDREERG
ARGQDRDRGKDQDRDRSRNNFGWSKKQAPPTSRSGRIVKGRGVFRFRTPS
RSRSRSTTPPHWKHAQKRTIKLSDLERIEEESKMREEEMKRREHERKRRH
EEATKNPKQSFFELSHASTYGGKITPDRFSPEHKAKSKDTADRGKAKERE
KAGEKDKARDVTPVKRRKSMDMNALDYEQQTESEVESEDEEQLKVKPPSK
QDIRVEPSTSKDRNAKRDERKPTEEKAKPKRSRSRSPRRQSPARRQQRSP
ARRPGQNYNQNQNQNQNQNQNQNQLNRGNRRNPFADRDRRRRSRSQDNEY
RNRYPLSPIRGRGSPSGDRRRQQRSRSQNRRQDSPSQRRQLSPGRKRQDS
PSKKRPNSTERKWRDSPERKRDDSHDRKREASPNWKRDDSPARKRKDSAN
RKREDSQDKKIQDSKRQEDSAGKKREDSPSKKRKDSDKKRQDSPVKRQES
PGRKRQDSPERKRRDSPDRRRKDSPARRRQESSGRRRQDSDGRRRRESSG
NRRSRSRGRWHSSSRSRSPSTSRSRRRRSRSPLPKLTSALPMSEEREKAA
REKMQKRAEAAMLMKEHMRNEIAKEEERRMEKQRQDDLDKERTTRELNEL
ERLKAETLRKLHEEDSVDPDAAASAGSASKTDATSTGAKSKRDSSSENRH
REKKRKHKKSKKSSGRSDNDASFLDH
BO33517.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Moca-cyp-PA | 970 | CG1866-PA | 1..970 | 1..970 | 5015 | 100 | Plus |
| Moca-cyp-PC | 685 | CG1866-PC | 1..685 | 286..970 | 3535 | 100 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 1..685 | 286..970 | 3535 | 100 | Plus |
| CG17266-PB | 183 | CG17266-PB | 14..183 | 10..182 | 461 | 52 | Plus |
| CG17266-PA | 183 | CG17266-PA | 14..183 | 10..182 | 461 | 52 | Plus |
| Moca-cyp-PC | 685 | CG1866-PC | 86..679 | 218..818 | 260 | 19.7 | Plus |
| Moca-cyp-PB | 685 | CG1866-PB | 86..679 | 218..818 | 260 | 19.7 | Plus |
