BO33518.complete Sequence
1282 bp assembled on 2012-12-19
GenBank Submission: KX796794
> BO33518.complete
GAAGTTATCAGTCGACATGGCGGAGAACGGACTGCGCGTGCCAGGGTCAT
CCGCGGTGGCCTCTGCGGTGGCTTCCACTGCGACGGGAGTCGGCGGTGGA
TCAGCAGCGGGAACTGCGGGGGCCGGGACAGGAGTGGTGCCCACCGGCGT
CAGCGGCGGGACGAGCAACGGGGAGCATGAGAACGAACACAACGCCAACG
CAGACGGCGAGAAGGCCCAGCCGGCGCCGGCGGTCCAGAAGTACATGCAG
GAGCTCATGACGGAGCGATCGCGCATGGAAAACCACTTCCCCCTGGCGGT
GAAGCTAATTGACGAAGCTCTGGAGCGTGTGCAGCTAAACGGACGCATTC
CCACGAGAGACCAGTACGCCGATGTCTACCAGCAGCGCACCATCAAGCTG
TCCCAAAAAGTGCACGTGCCCATCAAGGACAAGAAGTTCAACTATGTGGG
CAAGCTACTGGGGCCCAAGGGCAACTCACTGCGTCGCCTGCAGGAGGAGA
CGCAGTGCAAGATCGTCATACTTGGTCGCTTCTCAATGAAGGATCGCGCA
CGTGAGGAGGAGCTGCGCAACTCCGCGGACGCGAAGTACGCCCACCTGAA
TCTTCCTCTGCACGTCGAGGTGTCCACCATTGCTCCGCCCGCCGAGGCGT
ACGCTCGGGTGGCGTATGCCCTGGCCGAGATTCGGCGGTACCTCACGCCG
GACAAGCACGATGACATCCGCCAAGAGCAGTACCGCGAACTCATGGAGGA
TCCGGAGGCGGCCAAGAAGCTGACGCTTCGCCAGCTGCAACAGCAGTCGA
ATGCGGCAGCTAGTGGTGCAGGAGGAGGAGGCGGTGGTGGAGGCGGAAAC
GGAAATGGCGGCGCAGCTGGATCCGGCAGCAATAATGGCAATGGGAACCA
GCGCTCCGGCGGCAACTACAGACAAAAGTTTCAGCAACAATCACACTATC
GCCACAACGAGGAGACTGTCTATTTTCGCTCACACAACAATGCGTACCAC
CAGCCAAAACCCTATGTGCCAGCCGCCCAACGGGGCAATGCCATGCACAC
CACCTTGCCACCGCAAGCAATTGTGCGAGCCTCACCGCCCGGAATGGTCG
TCAGTGCGGCCAGCTTCAATGGCCGAAATGCCGGACTGGGTAATGCCGGC
GGTGGCGGAATCATGGCCAATAGCATCGTGGCCACCACTGGCGGTGGCAT
CGGTGGCGCTGTGCCGCCTAACATGCGTTACCGTCCCGCTGCCCCCTACC
AGTTTGTCAAGAAAGCAAGCTTTCTAGACCAT
BO33518.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-2-RB | 1251 | CG5821-PB | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| qkr58E-2-RC | 1251 | CG5821-PC | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| qkr58E-2-RA | 1251 | CG5821-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-2-RB | 2947 | CG5821-RB | 258..1505 | 17..1264 | 6240 | 100 | Plus |
| qkr58E-2-RC | 2907 | CG5821-RC | 507..1754 | 17..1264 | 6240 | 100 | Plus |
| qkr58E-2-RA | 2658 | CG5821-RA | 258..1505 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22416426..22417031 | 316..921 | 3030 | 100 | Plus |
| 2R | 25286936 | 2R | 22416066..22416366 | 17..317 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 22417249..22417493 | 1020..1264 | 1225 | 100 | Plus |
| 2R | 25286936 | 2R | 22417091..22417196 | 917..1022 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 21773807..21773885 | 435..513 | 245 | 87.3 | Plus |
| 2R | 25286936 | 2R | 22410975..22411039 | 513..449 | 235 | 90.8 | Minus |
| 2R | 25286936 | 2R | 22595165..22595235 | 449..519 | 235 | 88.7 | Plus |
| 2L | 23513712 | 2L | 20863694..20863758 | 513..449 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:00:53 has no hits.
BO33518.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:50 Download gff for
BO33518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-2-RA | 254..1501 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:33 Download gff for
BO33518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-2-RA | 258..1505 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:18 Download gff for
BO33518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| qkr58E-2-RA | 258..1505 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:18 Download gff for
BO33518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22416066..22416366 | 17..317 | 100 | -> | Plus |
| 2R | 22416428..22417031 | 318..921 | 100 | -> | Plus |
| 2R | 22417096..22417196 | 922..1022 | 100 | -> | Plus |
| 2R | 22417252..22417493 | 1023..1266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:33 Download gff for
BO33518.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18303571..18303871 | 17..317 | 100 | -> | Plus |
| arm_2R | 18303933..18304536 | 318..921 | 100 | -> | Plus |
| arm_2R | 18304601..18304701 | 922..1022 | 100 | -> | Plus |
| arm_2R | 18304757..18304998 | 1023..1266 | 99 | | Plus |
BO33518.pep Sequence
Translation from 16 to 1282
> BO33518.pep
MAENGLRVPGSSAVASAVASTATGVGGGSAAGTAGAGTGVVPTGVSGGTS
NGEHENEHNANADGEKAQPAPAVQKYMQELMTERSRMENHFPLAVKLIDE
ALERVQLNGRIPTRDQYADVYQQRTIKLSQKVHVPIKDKKFNYVGKLLGP
KGNSLRRLQEETQCKIVILGRFSMKDRAREEELRNSADAKYAHLNLPLHV
EVSTIAPPAEAYARVAYALAEIRRYLTPDKHDDIRQEQYRELMEDPEAAK
KLTLRQLQQQSNAAASGAGGGGGGGGGNGNGGAAGSGSNNGNGNQRSGGN
YRQKFQQQSHYRHNEETVYFRSHNNAYHQPKPYVPAAQRGNAMHTTLPPQ
AIVRASPPGMVVSAASFNGRNAGLGNAGGGGIMANSIVATTGGGIGGAVP
PNMRYRPAAPYQFVKKASFLDH
BO33518.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| qkr58E-2-PB | 416 | CG5821-PB | 1..416 | 1..416 | 2160 | 100 | Plus |
| qkr58E-2-PC | 416 | CG5821-PC | 1..416 | 1..416 | 2160 | 100 | Plus |
| qkr58E-2-PA | 416 | CG5821-PA | 1..416 | 1..416 | 2160 | 100 | Plus |
| qkr54B-PD | 428 | CG4816-PD | 33..295 | 44..314 | 630 | 48.6 | Plus |
| qkr54B-PB | 428 | CG4816-PB | 33..295 | 44..314 | 630 | 48.6 | Plus |
