Clone BO33521 Report

Search the DGRC for BO33521

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:335
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptRm62-RD
Protein status:BO33521.pep: Imported from assembly
Sequenced Size:1759

Clone Sequence Records

BO33521.complete Sequence

1759 bp assembled on 2013-05-17

GenBank Submission: KX796779

> BO33521.complete
GAAGTTATCAGTCGACATGGCACCACACGATCGCGACTTTGGTCACAGTG
GACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGGCGAGGAGGC
GGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGGCGATTACCA
CGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACCGCGGAGGCG
GCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGAGGAGGAGGT
GGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTTCTCCAACCT
GGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACGTAGCAAACC
GATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAGATCACCGTG
CGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGTCCATCTGCC
CGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGGCCCCCACCG
CTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCGAACTTCGTC
GGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACATCCTGCCCGC
TATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCGACGGACCTA
TCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAGATCCAGCAG
GTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACACCTGCGTCTT
CGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGCGCGGCTGCG
AGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTCTCCGCCGGC
TCTACTAACCTGAAGCGTTGCACCTACTTGGTGCTGGACGAGGCCGATCG
CATGTTAGACATGGGCTTCGAGCCCCAGATCAGAAAGATCGTCTCACAGA
TCCGGCCCGACCGACAGACGCTCATGTGGAGCGCTACCTGGCCCAAGGAG
GTCAAGCAGCTTGCCGAGGACTTTTTGGGCAACTACATCCAGATCAACAT
TGGATCGCTGGAGCTGTCCGCCAATCACAACATCCGCCAGGTGGTGGACG
TTTGTGACGAGTTCAGCAAGGAGGAGAAATTGAAGACCCTCCTGTCAGAC
ATCTACGACACCAGCGAGAGCCCCGGCAAGATTATCATATTCGTGGAGAC
AAAGCGACGCGTGGACAACCTGGTGCGCTTCATCCGCAGCTTCGGAGTCC
GTTGTGGAGCTATTCACGGTGACAAGTCGCAATCAGAACGAGACTTTGTG
CTCCGTGAGTTCCGCTCGGGCAAGTCCAACATTCTGGTGGCCACCGATGT
GGCGGCCCGTGGACTAGACGTGGACGGCATCAAGTATGTCATCAACTTTG
ACTACCCGCAAAACAGCGAGGACTACATCCATCGCATCGGTCGCACAGGA
CGATCCAACACAAAGGGCACCTCTTTCGCCTTCTTCACCAAGAACAATGC
CAAGCAAGCCAAGGCGCTGGTCGACGTACTCCGAGAAGCTAATCAGGAAA
TCAATCCTGCCCTGGAAAATCTGGCCCGCAACTCGCGCTACGACGGTGGC
GGCGGACGCTCCCGTTATGGAGGCGGTGGCGGCGGCGGTCGCTTCGGCGG
CGGCGGCTTCAAGAAGGGCAGCCTGAGCAACGGACGAGGCTTCGGAGGAG
GCGGCGGCGGCGGCGGCGAAGGCAGACACTCGCGCTTCGACGCAAGCTTT
CTAGACCAT

BO33521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RH 1728 CG10279-PH 1..1725 17..1741 8625 100 Plus
Rm62-RF 1737 CG10279-PF 10..1734 17..1741 8625 100 Plus
Rm62-RA 2160 CG10279-PA 433..2157 17..1741 8625 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-RH 2760 CG10279-RH 301..2025 17..1741 8625 100 Plus
Rm62-RF 2833 CG10279-RF 374..2098 17..1741 8625 100 Plus
Rm62-RA 2995 CG10279-RA 536..2260 17..1741 8625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6004017..6005126 1128..19 5550 100 Minus
3R 32079331 3R 6003673..6003911 1367..1129 1195 100 Minus
3R 32079331 3R 6001166..6001365 1741..1542 1000 100 Minus
3R 32079331 3R 6001557..6001739 1547..1365 915 100 Minus
X 23542271 X 7928923..7929222 1090..791 420 76 Minus
X 23542271 X 7929323..7929525 696..494 295 76.4 Minus
Blast to na_te.dros performed on 2014-11-28 13:38:07 has no hits.

BO33521.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:15 Download gff for BO33521.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 536..2260 17..1743 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:47 Download gff for BO33521.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 536..2260 17..1743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:45 Download gff for BO33521.complete
Subject Subject Range Query Range Percent Splice Strand
Rm62-RA 536..2260 17..1743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:45 Download gff for BO33521.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6001558..6001736 1368..1546 100 <- Minus
3R 6003673..6003911 1129..1367 100 <- Minus
3R 6001164..6001360 1547..1743 98 <- Minus
3R 6004017..6005128 17..1128 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:47 Download gff for BO33521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1826886..1827082 1547..1743 98 <- Minus
arm_3R 1827280..1827458 1368..1546 100 <- Minus
arm_3R 1829395..1829633 1129..1367 100 <- Minus
arm_3R 1829739..1830850 17..1128 99   Minus

BO33521.pep Sequence

Translation from 16 to 1759

> BO33521.pep
MAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGIRNG
RVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAPFKK
NFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDYVMK
EIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHIN
NQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPK
GGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMG
FEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLEL
SANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVD
NLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGL
DVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKA
LVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFKK
GSLSNGRGFGGGGGGGGEGRHSRFDASFLDH

BO33521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Rm62-PH 575 CG10279-PH 1..575 1..575 3046 100 Plus
Rm62-PF 578 CG10279-PF 4..578 1..575 3046 100 Plus
Rm62-PA 719 CG10279-PA 145..719 1..575 3046 100 Plus
Rm62-PB 578 CG10279-PB 4..578 1..575 3046 100 Plus
Rm62-PD 575 CG10279-PD 1..575 1..575 3046 100 Plus