BO33533.complete Sequence
1753 bp assembled on 2013-05-17
GenBank Submission: KX797604
> BO33533.complete
GAAGTTATCAGTCGACATGGAGCAGCTATTTCAGAATTACCGCGACGATG
AGCGAAGGATCGGCGAGGAGTATCTGTCAAGTCTCCAGGACCTCAACTGC
AACAGCAAGCCATTGATCAATATGCTCACGATGCTTGCCGAGGAGAACAT
CAACTACGCCCACATCATAGTTAAAGTGGTGGAATATTACATCAGCCAGG
TGGCGCCCGAATTTAAATTGCCCATACTATATTTAATTGATTCGATAGTA
AAGAATGTGAAAAGCAGCTACGTCCAATTGTTTGGACAGTGCATAGTCAA
CATATTCCTCCACGCCTTCGAATCGGTCCAGCACTCACAGTCGCAGGTTT
TGGAAAAGGTGCGGGAACGCATGTATGCCCTGCGTCAGACCTGGAACGAG
GTGTTCCCGCCATCCAAGATGTACGCGCTGGACGTTAAGGTGAAGCGCCT
AGATAACAACTGGCCCATTACTGCCAAACAGCCAACTAACAAAATTCACG
TCAATCCGGCCATTCATGTTAATCCGGATTTCTTAAAACCGGGTTTGGTT
CCTGGGATGCCTGGTAACCCCACAATCACCAGCGACATGGAGGAGATTTT
GCAAGCAAAAACTCGTGAGTTGCTGGAGCTCAAGAAGCGCAAACTGGAAC
TGGAGCTGGAGCAAACCAAAAAGCATTTAGAGGAGCAGGAGCGTCAGCTG
ACCCAAACCACGGACGCGATGGTTGGAGCACCGATTATTATGCCTGCTCC
CACTCCAGCAGCAATTTGTCCGCCAATCACGGATCCCGGTATAGCAGTGC
ATAATCAACGAGCTCCAGGGGTAATGGGCAATGTTGGTCCCGTAATGCAT
AACATGCCAGTGGCTCCGCAGCTTTTTGCGAATAAACCAAAAGTCCATCC
TGTCAATCCGGCACTGTTGAACTCGGTGCGCCAACGAGATCCGAGACTAG
CCCGCCAGATGCATGCGGCATCCTCACATCCAGCTGCGCCGGCACGAAAC
GATCCTCGGCTGGAGGCCAAATCTAGCTCCTCACAGAAGTCTAGTCGGTC
GCGCAGCAAATCGCCTGTGCGCAACAGCAGCAGTCGGTCTGGAAAGAGTG
GAAGCTCTAGCCACAGCAGTTCGTCGAGCCGCAAGCGAAGTGAGTCAAAG
AGCTCCACGACTTCCTCATCTTCGTCGAGCTCTGATGTTCGGCACAAGGG
TGTCACTGCAAGCAGCTCCAACCAGCCAACAGTTAAGCGGTCCGGTAAGA
TCACGTCTAAGGATTCGGATCGCTATGTTCGCAATGGATCTCCTTTGGGA
TCCGCGAAACGCAAGAGCAGCTCACCAAGTAGCTCGCCCTCCAAATCCAA
GCGCAGCACGTCGCACAAGTCATCCTCGTCGCGAGGAAAGACCTCTTCTC
TGCGTTCCCGCAGTCGATCTCCAGTTTTTATGGACGTCGACCTACGCACC
GGAGTTCGAAGCAAGTCACCAGAGAGCAGGGCAGTTGCCCCATCATCCTT
ACCACTGGCGGGCGCATCACTACCAGCATCAGCTAAAGCACCAAAAGATT
TAGAGAAACGTAAGAAACAACTTTTAATTCTAATCTCACACTTGTTAGCG
AACAACCAAGTCTGGTTTGACTTGGAACCTAGAGCTACAGACAGCTTAGT
TGAAAATTTAGAATATATCAACCAGAATGGCGGCACTCGATGGCTTAGGT
TGGTGGAAGGGCGGGTTATTGGGACCGTATGTGGTGCAAGCTTTCTAGAC
CAT
BO33533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inr-a-RB | 1722 | CG10228-PB | 1..1719 | 17..1735 | 8580 | 99.9 | Plus |
| Inr-a-RH | 5520 | CG10228-PH | 1..1544 | 17..1560 | 7705 | 99.9 | Plus |
| Inr-a-RE | 5520 | CG10228-PE | 1..1544 | 17..1560 | 7705 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inr-a-RB | 2647 | CG10228-RB | 234..1952 | 17..1735 | 8580 | 99.9 | Plus |
| Inr-a-RH | 6199 | CG86-RH | 234..1777 | 17..1560 | 7705 | 99.9 | Plus |
| Inr-a-RE | 5979 | CG10228-RE | 234..1777 | 17..1560 | 7705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14867308..14868174 | 1735..869 | 4335 | 100 | Minus |
| 2R | 25286936 | 2R | 14868233..14868563 | 871..541 | 1640 | 99.7 | Minus |
| 2R | 25286936 | 2R | 14868627..14868844 | 542..325 | 1090 | 100 | Minus |
| 2R | 25286936 | 2R | 14870047..14870231 | 201..17 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 14868905..14869035 | 327..197 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:38:12 has no hits.
BO33533.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:17 Download gff for
BO33533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcf11-RB | 233..1951 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:49 Download gff for
BO33533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inr-a-RB | 234..1952 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:46 Download gff for
BO33533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Inr-a-RB | 234..1952 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:46 Download gff for
BO33533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14867304..14868171 | 872..1737 | 99 | <- | Minus |
| 2R | 14868233..14868562 | 542..871 | 99 | <- | Minus |
| 2R | 14868628..14868843 | 326..541 | 100 | <- | Minus |
| 2R | 14868907..14869032 | 200..325 | 100 | <- | Minus |
| 2R | 14870049..14870231 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:49 Download gff for
BO33533.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10754809..10755676 | 872..1737 | 99 | <- | Minus |
| arm_2R | 10755738..10756067 | 542..871 | 99 | <- | Minus |
| arm_2R | 10756133..10756348 | 326..541 | 100 | <- | Minus |
| arm_2R | 10756412..10756537 | 200..325 | 100 | <- | Minus |
| arm_2R | 10757554..10757736 | 17..199 | 100 | | Minus |
BO33533.pep Sequence
Translation from 16 to 1753
> BO33533.pep
MEQLFQNYRDDERRIGEEYLSSLQDLNCNSKPLINMLTMLAEENINYAHI
IVKVVEYYISQVAPEFKLPILYLIDSIVKNVKSSYVQLFGQCIVNIFLHA
FESVQHSQSQVLEKVRERMYALRQTWNEVFPPSKMYALDVKVKRLDNNWP
ITAKQPTNKIHVNPAIHVNPDFLKPGLVPGMPGNPTITSDMEEILQAKTR
ELLELKKRKLELELEQTKKHLEEQERQLTQTTDAMVGAPIIMPAPTPAAI
CPPITDPGIAVHNQRAPGVMGNVGPVMHNMPVAPQLFANKPKVHPVNPAL
LNSVRQRDPRLARQMHAASSHPAAPARNDPRLEAKSSSSQKSSRSRSKSP
VRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSDVRHKGVTASS
SNQPTVKRSGKITSKDSDRYVRNGSPLGSAKRKSSSPSSSPSKSKRSTSH
KSSSSRGKTSSLRSRSRSPVFMDVDLRTGVRSKSPESRAVAPSSLPLAGA
SLPASAKAPKDLEKRKKQLLILISHLLANNQVWFDLEPRATDSLVENLEY
INQNGGTRWLRLVEGRVIGTVCGASFLDH
BO33533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Inr-a-PB | 573 | CG10228-PB | 1..573 | 1..573 | 2906 | 100 | Plus |
| Inr-a-PH | 1839 | CG10228-PH | 1..515 | 1..515 | 2603 | 100 | Plus |
| Inr-a-PE | 1839 | CG10228-PE | 1..515 | 1..515 | 2603 | 100 | Plus |
| Inr-a-PD | 1953 | CG10228-PD | 1..520 | 1..520 | 2603 | 99.2 | Plus |
| Inr-a-PG | 1945 | CG10228-PG | 1..515 | 1..515 | 2603 | 100 | Plus |
