BO33536.complete Sequence
580 bp assembled on 2013-04-22
GenBank Submission: KX796862
> BO33536.complete
GAAGTTATCAGTCGACATGGACGTGCAACCGCCACGCGATGCCAGTTTAC
GAAATATTATCGACAAACTGGCGGAGTTTGTGGCCAGAAATGGGCCGGAA
TTCGAGGCGATAACCAAGCAGAAGCAGCAGAACAATCCAAAGTTCGAGTT
CCTCTACGGCGGGGAGTTCGCCAACTATTATCAATTCAGGGTGGCAGCGG
AACAAGCTCTGCTAAAGCAACAGGCCATTAACCAACAACTGCCACCAGGT
GCTCCATCCGGCCACTACATGCAACATCCGCCGCCAATGCAGCAATCCCA
ACCACCGGGCCTCTATCCGCCACCCAATCAGCAGCCACCGCACCCGCCCG
AAACCGCACAAGACAATATGCAACAGCAAACACAGCACTCCTGGCCGCCG
AACTCCGGCAACGGTGGGCCGCCAAACAATCAGCAGGCCAATGGCAATCC
CATGGCCATGAATCTAACGTCACAACTGGAAGCCATCAAGATGCAGCAGA
AGTCGCTGCGGGAACAGATCCAGCAATCCGAAGCGAATCTCTCCGCACAG
CACACGGTAATTGCAAGCTTTCTAGACCAT
BO33536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RC | 549 | CG33522-PC | 1..546 | 17..562 | 2730 | 100 | Plus |
| scaf6-RE | 756 | CG33522-PE | 1..541 | 17..557 | 2705 | 100 | Plus |
| scaf6-RA | 2883 | CG33522-PA | 1..541 | 17..557 | 2705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RC | 1415 | CG33522-RC | 116..661 | 17..562 | 2730 | 100 | Plus |
| scaf6-RE | 2998 | CG33522-RE | 116..656 | 17..557 | 2705 | 100 | Plus |
| scaf6-RA | 3071 | CG33522-RA | 116..656 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17041688..17042040 | 562..210 | 1765 | 100 | Minus |
| 3L | 28110227 | 3L | 17042103..17042274 | 209..38 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:28:32 has no hits.
BO33536.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-22 15:58:23 Download gff for
BO33536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RC | 101..646 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:09 Download gff for
BO33536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RC | 116..661 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:46 Download gff for
BO33536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RC | 116..661 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:46 Download gff for
BO33536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17041685..17042040 | 210..564 | 99 | <- | Minus |
| 3L | 17042103..17042273 | 39..209 | 100 | <- | Minus |
| 3L | 17042438..17042459 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:09 Download gff for
BO33536.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17034785..17035140 | 210..564 | 99 | <- | Minus |
| arm_3L | 17035203..17035373 | 39..209 | 100 | <- | Minus |
| arm_3L | 17035538..17035559 | 17..38 | 100 | | Minus |
BO33536.pep Sequence
Translation from 16 to 580
> BO33536.pep
MDVQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE
FANYYQFRVAAEQALLKQQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLY
PPPNQQPPHPPETAQDNMQQQTQHSWPPNSGNGGPPNNQQANGNPMAMNL
TSQLEAIKMQQKSLREQIQQSEANLSAQHTVIASFLDH
BO33536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-PC | 182 | CG33522-PC | 1..182 | 1..182 | 978 | 100 | Plus |
| scaf6-PE | 251 | CG33522-PE | 1..182 | 1..182 | 972 | 98.9 | Plus |
| scaf6-PA | 960 | CG33522-PA | 1..182 | 1..182 | 972 | 98.9 | Plus |
| CG16941-PA | 784 | CG16941-PA | 29..84 | 3..59 | 150 | 53.4 | Plus |
