BO33538.complete Sequence
1090 bp assembled on 2012-12-19
GenBank Submission: KX799501
> BO33538.complete
GAAGTTATCAGTCGACATGTACGGCAACAATAATCCGGGTAGTAACAATA
ATAATGGTGGTTATCCCCCATATGGCTACAACAACAAGTCGAGTGGTGGG
CGTGGATTTGGGATGTCCCATTCTCTGCCATCCGGAATGTCACGTTATGC
GTTCTCGCCACAGGATACAGAATTTTCATTTCCAAGTTCATCGTCGCGTC
GTGGTTACAATGATTTCCCCGGCTGCGGCGGCAGCGGCGGAAATGGTGGG
AGTGCCAACAATTTAGGGGGCGGCAACATGTGCCACCTGCCGCCGATGGC
CAGCAACAACTCGCTGAATAATCTCTGCGGATTGTCGCTGGGCAGCGGTG
GTAGTGATGATCTCATGAACGATCCTCGGGCAAGCAACACCAACCTGATT
GTCAACTACTTGCCCCAGGACATGACCGATCGCGAGCTGTACGCCCTATT
CAGAGCCATTGGACCCATCAACACGTGCAGAATCATGCGAGACTATAAGA
CTGGCTACAGTTTTGGTTATGCTTTCGTGGACTTCACATCGGAAATGGAC
TCGCAGCGTGCTATTAAAGTGCTGAATGGCATCACAGTGCGCAACAAGCG
GCTTAAGGTTTCCTATGCACGTCCCGGCGGAGAATCGATCAAGGACACCA
ATCTGTATGTGACCAATCTGCCGCGTACCATAACCGACGATCAGCTGGAC
ACGATCTTCGGCAAGTACGGTTCCATTGTGCAGAAGAACATCTTGCGTGA
CAAGCTCACAGGTCGTCCTCGTGGTGTGGCCTTTGTTCGGTACAACAAGC
GTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACGTAATACCCGAG
GGCGGATCACAGCCGCTGTCCGTCCGGTTGGCTGAGGAGCATGGCAAGGC
GAAGGCGGCCCACTTTATGTCGCAGATGGGCGTGGTTCCAGCAAATGTAC
CACCGCCGCCACCACAACCGCCAGCACATATGGCCGCCGCATTCAACATG
ATGCACAGAGGCGAAAACTTTGCCGATTTGCTTGACGGATTGTACCGTAG
GAAGTACCATTATCCTTACTTAGCAAGCTTTCTAGACCAT
BO33538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RY | 2127 | CG43770-PY | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| Sxl-RP | 1059 | CG43770-PP | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| Sxl-RT | 1065 | CG43770-PT | 1..995 | 17..1011 | 4975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-RY | 4060 | CG43770-RY | 409..1464 | 17..1072 | 5280 | 100 | Plus |
| Sxl-RP | 4060 | CG43770-RP | 409..1464 | 17..1072 | 5280 | 100 | Plus |
| Sxl-RT | 1910 | CG43770-RT | 482..1476 | 17..1011 | 4975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7085619..7085979 | 499..139 | 1805 | 100 | Minus |
| X | 23542271 | X | 7084598..7084820 | 1011..789 | 1115 | 100 | Minus |
| X | 23542271 | X | 7085156..7085341 | 791..606 | 930 | 100 | Minus |
| X | 23542271 | X | 7085408..7085519 | 609..498 | 560 | 100 | Minus |
| X | 23542271 | X | 7091674..7091750 | 93..17 | 385 | 100 | Minus |
| X | 23542271 | X | 7079306..7079369 | 1072..1009 | 320 | 100 | Minus |
| X | 23542271 | X | 7087614..7087661 | 139..92 | 240 | 100 | Minus |
| X | 23542271 | X | 1371663..1371769 | 388..494 | 205 | 79.4 | Plus |
| X | 23542271 | X | 1372462..1372598 | 791..927 | 205 | 76.6 | Plus |
Blast to na_te.dros performed 2014-11-28 13:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 690..729 | 254..215 | 110 | 75 | Minus |
BO33538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-19 16:42:51 Download gff for
BO33538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14425-RB | 409..1464 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:39 Download gff for
BO33538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RP | 409..1464 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:19:38 Download gff for
BO33538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sxl-RP | 409..1464 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:19:38 Download gff for
BO33538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7085410..7085517 | 500..607 | 100 | <- | Minus |
| X | 7079304..7079367 | 1011..1074 | 96 | <- | Minus |
| X | 7084599..7084819 | 790..1010 | 100 | <- | Minus |
| X | 7085158..7085339 | 608..789 | 100 | <- | Minus |
| X | 7085619..7085978 | 140..499 | 100 | <- | Minus |
| X | 7087614..7087659 | 94..139 | 100 | <- | Minus |
| X | 7091674..7091750 | 17..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:39 Download gff for
BO33538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6981647..6981692 | 94..139 | 100 | <- | Minus |
| arm_X | 6985707..6985783 | 17..93 | 100 | | Minus |
| arm_X | 6978632..6978852 | 790..1010 | 100 | <- | Minus |
| arm_X | 6979191..6979372 | 608..789 | 100 | <- | Minus |
| arm_X | 6979443..6979550 | 500..607 | 100 | <- | Minus |
| arm_X | 6979652..6980011 | 140..499 | 100 | <- | Minus |
| arm_X | 6973337..6973400 | 1011..1074 | 96 | <- | Minus |
BO33538.pep Sequence
Translation from 16 to 1090
> BO33538.pep
MYGNNNPGSNNNNGGYPPYGYNNKSSGGRGFGMSHSLPSGMSRYAFSPQD
TEFSFPSSSSRRGYNDFPGCGGSGGNGGSANNLGGGNMCHLPPMASNNSL
NNLCGLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGP
INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY
ARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR
PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKAKAAHF
MSQMGVVPANVPPPPPQPPAHMAAAFNMMHRGENFADLLDGLYRRKYHYP
YLASFLDH
BO33538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sxl-PP | 352 | CG43770-PP | 1..352 | 1..352 | 1886 | 100 | Plus |
| Sxl-PY | 708 | CG43770-PY | 1..352 | 1..352 | 1886 | 100 | Plus |
| Sxl-PW | 344 | CG43770-PW | 1..344 | 1..352 | 1825 | 97.7 | Plus |
| Sxl-PH | 366 | CG43770-PH | 1..366 | 1..352 | 1786 | 91.7 | Plus |
| Sxl-PT | 354 | CG43770-PT | 1..334 | 1..334 | 1774 | 99.4 | Plus |
