BO33541.complete Sequence
1141 bp assembled on 2013-04-22
GenBank Submission: KX798005
> BO33541.complete
GAAGTTATCAGTCGACATGGACATCAAGATTGAGCAGCAGCAGCAGCAAC
AGCAAGTGGAGCTGGGACCCTGTTCCCCCTCGGAGGTGCCCAATGATCCC
GGAAAAATGTTCATTGGCGGCCTCAGTTGGCAGACAAGTCCAGAGAGCTT
ACGCGATTACTTCGGACGTTACGGTGATATCTCAGAGGCTATGGTCATGA
AGGATCCCACGACGCGCAGATCCAGAGGCTTCGGCTTTGTCACATTCAGC
GATCCAAATAGCGTAGATAAGGTACTCACCCAAGGCACACACGAGCTGGA
TGGCAAAAAGGTCGATCCGAAAGTAGCTTTTCCGCGCCGTGCACATCCCA
AGATGGTGACGAGAACGAAGAAAATCTTTGTGGGCGGCCTCTCGGCGCCC
ACCACACTGGAGGATGTCAAAAGTTACTTCGAACAGTTTGGTCCGATCGA
GGATGCAATGTTGATGTTCGATAAGCAGACCAATCGGCACAGAGGTTTTG
GCTTCGTTACATTTCAAAGCGAAGATGTGGTAGACAAAGTTTGCGAAATT
CATTTCCACGAGATAAACAACAAAATGGTCGAGTGCAAGAAGGCGCAGCC
GAAGGAAGTGATGCTGCCGGCCAATCTGGCCAAGACGCGGGCTGCCGGGC
GTTCTGCATACGATAACATCATGTGGGGACTGGGGACATTGCCCGAAGGT
TTTCCGGCAGCTGCCTATGCTGCTTATGCCGCTGGTCGCGGATACTCGGG
CTATCCCAGTTTTGGACTGCCCTATCCAACTGTTGATCTAACCAATGGGC
AGCTGACACCCAACAACAATACACCGCTGCTGACCCAGGCGCTGTCAGTG
ATGAACAACTATCAGGCGGCTGCTGCCGCTGCCCACAGCTATGGGCCGTC
GGCATCGCCGCATGCCGCCGCCGCCAACACGGCCACCCGGCAGGGATTCC
CCTCCACCAACTCACCTGGCCCCACCATCGACATGTACAGCTCGGCGGCC
GCCGACAATGTGGGCTATGTGCAGGCCACCAGTCCGCAGCCGTCCGGCTT
CCCCATCGCCGTCAGCCGCGCCCCGTTGAACTACAGCCCGATTTATTCGT
TGAACTTTGCGATGGCTAATATAGCAAGCTTTCTAGACCAT
BO33541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp6-RA | 1110 | CG32169-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
| Rbp6-RG | 1116 | CG32169-PG | 1..1074 | 17..1090 | 5370 | 100 | Plus |
| Rbp6-RC | 774 | CG32169-PC | 1..771 | 353..1123 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp6-RA | 2173 | CG32169-RA | 1005..2113 | 15..1123 | 5545 | 100 | Plus |
| Rbp6-RG | 9015 | CG32169-RG | 1005..2080 | 15..1090 | 5380 | 100 | Plus |
| Rbp6-RC | 2260 | CG32169-RC | 864..1634 | 353..1123 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17067137..17067381 | 1090..846 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 17128879..17128973 | 445..351 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 17167013..17167102 | 312..223 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 17235352..17235439 | 102..15 | 440 | 100 | Minus |
| 3L | 28110227 | 3L | 17078114..17078200 | 579..493 | 435 | 100 | Minus |
| 3L | 28110227 | 3L | 17074193..17074278 | 782..697 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 17077622..17077707 | 662..577 | 430 | 100 | Minus |
| 3L | 28110227 | 3L | 17179294..17179378 | 225..141 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 17067993..17068059 | 848..782 | 335 | 100 | Minus |
| 3L | 28110227 | 3L | 17084106..17084157 | 496..445 | 260 | 100 | Minus |
| 3L | 28110227 | 3L | 17164913..17164956 | 352..309 | 220 | 100 | Minus |
| 3L | 28110227 | 3L | 17221802..17221843 | 143..102 | 210 | 100 | Minus |
| 3L | 28110227 | 3L | 17074351..17074389 | 700..662 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:28:12 has no hits.
BO33541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-22 15:51:17 Download gff for
BO33541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp6-RA | 1005..2111 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:07:07 Download gff for
BO33541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp6-RA | 1007..2113 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:28:44 Download gff for
BO33541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp6-RA | 1007..2113 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:28:44 Download gff for
BO33541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17066806..17066840 | 1091..1125 | 94 | <- | Minus |
| 3L | 17067137..17067378 | 849..1090 | 100 | <- | Minus |
| 3L | 17067993..17068058 | 783..848 | 100 | <- | Minus |
| 3L | 17074193..17074276 | 699..782 | 100 | <- | Minus |
| 3L | 17074353..17074388 | 663..698 | 100 | <- | Minus |
| 3L | 17077622..17077706 | 578..662 | 100 | <- | Minus |
| 3L | 17078116..17078198 | 495..577 | 100 | <- | Minus |
| 3L | 17084108..17084156 | 446..494 | 100 | <- | Minus |
| 3L | 17128879..17128971 | 353..445 | 100 | <- | Minus |
| 3L | 17164913..17164954 | 311..352 | 100 | <- | Minus |
| 3L | 17167015..17167099 | 226..310 | 100 | <- | Minus |
| 3L | 17179294..17179375 | 144..225 | 100 | <- | Minus |
| 3L | 17221802..17221842 | 103..143 | 100 | <- | Minus |
| 3L | 17235352..17235437 | 17..102 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:07:07 Download gff for
BO33541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17067453..17067488 | 663..698 | 100 | <- | Minus |
| arm_3L | 17070722..17070806 | 578..662 | 100 | <- | Minus |
| arm_3L | 17071216..17071298 | 495..577 | 100 | <- | Minus |
| arm_3L | 17077208..17077256 | 446..494 | 100 | <- | Minus |
| arm_3L | 17121979..17122071 | 353..445 | 100 | <- | Minus |
| arm_3L | 17158013..17158054 | 311..352 | 100 | <- | Minus |
| arm_3L | 17160115..17160199 | 226..310 | 100 | <- | Minus |
| arm_3L | 17172394..17172475 | 144..225 | 100 | <- | Minus |
| arm_3L | 17214902..17214942 | 103..143 | 100 | <- | Minus |
| arm_3L | 17228452..17228537 | 17..102 | 100 | | Minus |
| arm_3L | 17059906..17059940 | 1091..1125 | 94 | <- | Minus |
| arm_3L | 17060237..17060478 | 849..1090 | 100 | <- | Minus |
| arm_3L | 17061093..17061158 | 783..848 | 100 | <- | Minus |
| arm_3L | 17067293..17067376 | 699..782 | 100 | <- | Minus |
BO33541.pep Sequence
Translation from 16 to 1141
> BO33541.pep
MDIKIEQQQQQQQVELGPCSPSEVPNDPGKMFIGGLSWQTSPESLRDYFG
RYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVD
PKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLM
FDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQPKEVML
PANLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAYAAYAAGRGYSGYPSFG
LPYPTVDLTNGQLTPNNNTPLLTQALSVMNNYQAAAAAAHSYGPSASPHA
AAANTATRQGFPSTNSPGPTIDMYSSAAADNVGYVQATSPQPSGFPIAVS
RAPLNYSPIYSLNFAMANIASFLDH
BO33541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:13:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp6-PA | 369 | CG32169-PA | 1..369 | 1..369 | 1945 | 100 | Plus |
| Rbp6-PG | 371 | CG32169-PG | 1..358 | 1..358 | 1891 | 100 | Plus |
| Rbp6-PC | 257 | CG32169-PC | 1..257 | 113..369 | 1347 | 100 | Plus |
| Rbp6-PE | 259 | CG32169-PE | 1..246 | 113..358 | 1293 | 100 | Plus |
| Rbp6-PB | 499 | CG32169-PB | 1..238 | 1..240 | 1148 | 92.5 | Plus |
| Rbp6-PE | 259 | CG32169-PE | 7..250 | 30..321 | 187 | 26.3 | Plus |
