Clone BO33611 Report

Search the DGRC for BO33611

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:336
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptRpL23A-RA
Protein status:BO33611.pep: Imported from assembly
Sequenced Size:902

Clone Sequence Records

BO33611.complete Sequence

902 bp assembled on 2013-05-22

> BO33611.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGCCAACCGAGAAATCCGCCA
AGCCTGGCGACAAGAAGCCAGAGCAGAAGAAGACTGCTGCGGCTCCCGCT
GCCGGCAAGAAGGAGGCTGCTCCCTCGGCTGCCAAGCCAGCTGCCGCTGC
GCCCAAGAAGGCTGCTGCCCCAGCGGCTAAGAAGGCTGCTCCGGCCGCCA
AGAAGCCAGCGACCGCCGGTGCTGCTGCCAAGAAGCCCGCGGCCGTAAAG
ACGACCGCGGCCGCCAAGGCCAAGAGCAAGGATGCCAAGAAGAAGGTCCT
CGCCGGCAAGAAGCCCCAGTCCGTGCTGGCCAAGCTCTCTGCCAAGGCTC
GCGCGGCCGCCAAGGCCAAGAAGGGCGTGAAGCCCGTGACCAAGCCCGCC
AAGGGAACCGCCAAGGCCAAGGCTGTGGCTCTGCTGAACGCCAAGAAGGT
CCAGAAGAAGATCATCAAGGGCGCCTTCGGCACCCGTGCCCGCAAGATCC
GCACCAACGTGCACTTCCGTCGGCCAACCACCCTGAAGCTGCCCAGGAGT
CCCAAGTACCCCAGGAAATCGGTGCCCACCAGGAACCGCATGGACGCGTA
CAACATCATCAAGTACCCACTGACCACCGAGGCGGCCATGAAGAAGATCG
AGGACAACAACACCCTGGTCTTCCTCACACACCTGCGCGCCAACAAGAAC
CACGTGCGTGCCGCAGTGCGCAAGCTCTACGACATCAAGGTGGCCAAGGT
GAACGTGCTCATCCGGCCCGATGGCCAGAAGAAGGCCTATGTGCGCCTGG
CGCGCGACTACGACGCCCTGGACATTGCCAACAAGATAGGGATCATAGCG
AAGCTTTCTAGACCTATTCGTGGTGGCGGGCGCGAAAAAGGGGGGGGGGG
GT

BO33611.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23A-RA 834 CG7977-PA 1..831 17..847 4125 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23A-RA 1016 CG7977-RA 29..859 17..847 4125 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1667809..1668222 460..47 2070 100 Minus
3L 28110227 3L 1667349..1667737 847..459 1915 99.5 Minus
Blast to na_te.dros performed 2014-11-28 13:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 650..750 116..222 126 59.8 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 647..753 161..267 112 56.1 Plus

BO33611.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 15:04:13 Download gff for BO33611.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23A-RA 52..887 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:13 Download gff for BO33611.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23A-RA 29..864 17..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:36 Download gff for BO33611.complete
Subject Subject Range Query Range Percent Splice Strand
RpL23A-RA 29..864 17..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:36 Download gff for BO33611.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1667359..1667735 461..837 100 <- Minus
3L 1667809..1668221 48..460 100 <- Minus
3L 1668596..1668626 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:13 Download gff for BO33611.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1667359..1667735 461..837 100 <- Minus
arm_3L 1667809..1668221 48..460 100 <- Minus
arm_3L 1668596..1668626 17..47 100   Minus

BO33611.pep Sequence

Translation from 16 to 901

> BO33611.pep
MPPKKPTEKSAKPGDKKPEQKKTAAAPAAGKKEAAPSAAKPAAAAPKKAA
APAAKKAAPAAKKPATAGAAAKKPAAVKTTAAAKAKSKDAKKKVLAGKKP
QSVLAKLSAKARAAAKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKII
KGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKY
PLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIR
PDGQKKAYVRLARDYDALDIANKIGIIAKLSRPIRGGGREKGGGG

BO33611.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL23A-PA 277 CG7977-PA 1..277 1..277 1372 100 Plus
RpL22-PA 299 CG7434-PA 3..189 2..161 180 38 Plus
RpL22-PA 299 CG7434-PA 64..241 5..175 157 36.2 Plus