BO33611.complete Sequence
902 bp assembled on 2013-05-22
> BO33611.complete
GAAGTTATCAGTCGACATGCCACCCAAAAAGCCAACCGAGAAATCCGCCA
AGCCTGGCGACAAGAAGCCAGAGCAGAAGAAGACTGCTGCGGCTCCCGCT
GCCGGCAAGAAGGAGGCTGCTCCCTCGGCTGCCAAGCCAGCTGCCGCTGC
GCCCAAGAAGGCTGCTGCCCCAGCGGCTAAGAAGGCTGCTCCGGCCGCCA
AGAAGCCAGCGACCGCCGGTGCTGCTGCCAAGAAGCCCGCGGCCGTAAAG
ACGACCGCGGCCGCCAAGGCCAAGAGCAAGGATGCCAAGAAGAAGGTCCT
CGCCGGCAAGAAGCCCCAGTCCGTGCTGGCCAAGCTCTCTGCCAAGGCTC
GCGCGGCCGCCAAGGCCAAGAAGGGCGTGAAGCCCGTGACCAAGCCCGCC
AAGGGAACCGCCAAGGCCAAGGCTGTGGCTCTGCTGAACGCCAAGAAGGT
CCAGAAGAAGATCATCAAGGGCGCCTTCGGCACCCGTGCCCGCAAGATCC
GCACCAACGTGCACTTCCGTCGGCCAACCACCCTGAAGCTGCCCAGGAGT
CCCAAGTACCCCAGGAAATCGGTGCCCACCAGGAACCGCATGGACGCGTA
CAACATCATCAAGTACCCACTGACCACCGAGGCGGCCATGAAGAAGATCG
AGGACAACAACACCCTGGTCTTCCTCACACACCTGCGCGCCAACAAGAAC
CACGTGCGTGCCGCAGTGCGCAAGCTCTACGACATCAAGGTGGCCAAGGT
GAACGTGCTCATCCGGCCCGATGGCCAGAAGAAGGCCTATGTGCGCCTGG
CGCGCGACTACGACGCCCTGGACATTGCCAACAAGATAGGGATCATAGCG
AAGCTTTCTAGACCTATTCGTGGTGGCGGGCGCGAAAAAGGGGGGGGGGG
GT
BO33611.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL23A-RA | 834 | CG7977-PA | 1..831 | 17..847 | 4125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL23A-RA | 1016 | CG7977-RA | 29..859 | 17..847 | 4125 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1667809..1668222 | 460..47 | 2070 | 100 | Minus |
3L | 28110227 | 3L | 1667349..1667737 | 847..459 | 1915 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 13:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 650..750 | 116..222 | 126 | 59.8 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 647..753 | 161..267 | 112 | 56.1 | Plus |
BO33611.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-22 15:04:13 Download gff for
BO33611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL23A-RA | 52..887 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:13 Download gff for
BO33611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL23A-RA | 29..864 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:36 Download gff for
BO33611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL23A-RA | 29..864 | 17..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:36 Download gff for
BO33611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1667359..1667735 | 461..837 | 100 | <- | Minus |
3L | 1667809..1668221 | 48..460 | 100 | <- | Minus |
3L | 1668596..1668626 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:13 Download gff for
BO33611.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1667359..1667735 | 461..837 | 100 | <- | Minus |
arm_3L | 1667809..1668221 | 48..460 | 100 | <- | Minus |
arm_3L | 1668596..1668626 | 17..47 | 100 | | Minus |
BO33611.pep Sequence
Translation from 16 to 901
> BO33611.pep
MPPKKPTEKSAKPGDKKPEQKKTAAAPAAGKKEAAPSAAKPAAAAPKKAA
APAAKKAAPAAKKPATAGAAAKKPAAVKTTAAAKAKSKDAKKKVLAGKKP
QSVLAKLSAKARAAAKAKKGVKPVTKPAKGTAKAKAVALLNAKKVQKKII
KGAFGTRARKIRTNVHFRRPTTLKLPRSPKYPRKSVPTRNRMDAYNIIKY
PLTTEAAMKKIEDNNTLVFLTHLRANKNHVRAAVRKLYDIKVAKVNVLIR
PDGQKKAYVRLARDYDALDIANKIGIIAKLSRPIRGGGREKGGGG
BO33611.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL23A-PA | 277 | CG7977-PA | 1..277 | 1..277 | 1372 | 100 | Plus |
RpL22-PA | 299 | CG7434-PA | 3..189 | 2..161 | 180 | 38 | Plus |
RpL22-PA | 299 | CG7434-PA | 64..241 | 5..175 | 157 | 36.2 | Plus |