BO33619.complete Sequence
1717 bp assembled on 2013-04-18
GenBank Submission: KX796306
> BO33619.complete
GAAGTTATCAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGA
TCAGTCCGCCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAG
CAGGATCCTCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCA
GCTACAGCAAAGCTTCTGCGAGACAACGTATCACATGAAAATACTGGTGC
CCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGACGATCGCC
TCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAGTCGCACGA
CTTCTACCCAGGCACCACCGAACGCGTGTGCCTGATCACCGGCTCCACGG
AGGCTATCATGGTCGTGATGGAGTTCATCATGGACAAGATCCGCGAGAAG
CCCGACCTGACCAACAAGATCGTCGATACCGACTCAAAACAGACACAGGA
GCGCGACAAGCAGGTCAAGATCCTGGTGCCCAACTCGACCGCCGGCATGA
TCATTGGCAAGGGCGGTGCCTTCATTAAACAGATCAAGGAGGAGAGCGGC
TCCTATGTCCAGATCTCGCAGAAGCCCACGGATGTGTCGTTGCAGGAGCG
CTGCATCACCATCATAGGCGACAAGGAGAACAATAAGAACGCCTGCAAGA
TGATCCTCTCGAAGATCGTCGAAGATCCCCAGTCGGGCACCTGCCTGAAC
GTATCCTACGCGGACGTCAGCGGCCCGGTGGCCAACTTTAATCCGACCGG
CTCCCCGTACGCCACCAATCAGAATGCCATCAACTCGAGCACCGCTTCGT
TGAACTCCACGTTGGGCACCACGATCGGCGGTGCAAACTCGGCGGCCAGC
CTGCTAGTCAACGGCACCGGCATCAATTTGTCCATCAATCTGGGCTCACC
CAATCCGGCGCCCAATCTAGCGGTTGCCACACAGCTGCTCGAGCATATTA
AGGTTGCCATGCGCGGCTCTGGCTATTCGGAGACCGTAACGAACGAAGTT
GTCGCCGCTCTGAGCGTGCTGGCCAAGTACGGCGTCCTTGGAATGGGCGT
GGGTGTGTCGCACACCAACGGCGCCCACTCAACGCTGGGCAACTTCCTGG
GCGTAACGACGCTGGACCAGCAGACAGCCGCTGCCGCATCTGCGGCCACC
GCCAGCAATGTGTTCGGTGCCGTTGGCCAGGTAAATCTGGAGCAATATGC
CGCAGCGGTGGCCTCTGCAGCTGCCGCCAGCCGGCCGACGCAGTCGCAAC
TGGACGCTGCCGCAGTGCAATTCGATCCATTCCGCCATTTGGGCTCGGCA
ACGGCGCCGGCCGCCACGCCCGTCTCACTGAACAACAATAGCTTTGGATT
GACGGCGACCACGGGAACGGCGACCACGGCGCAGCTGGGCGGTCTAAGCA
AGAGTCCCACTCCCGGTGACCTTAGCTCCAAGGACTCGAAAAACGTCGAG
GTGCCGGAAGTGATTATCGGCGCTATCCTAGGTCCGAGCGGTCGTAGTTT
AGTTGAAATTCAACATGTTTCTGGCGCAAATGTGCAAATTTCCAAAAAGG
GCATATTCGCACCTGGCACTAGAAATCGCATTGTAACCATAACTGGTCAG
CCGAGTGCCATTGCCAAAGCGCAATATCTAATTGAACAGAAAATCAACGA
GGAGGAGACAAAGAGGGCGCGACAAATTCCATTAACCACTGTTGTGAATG
CAAGCTTTCTAGACCAT
BO33619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RC | 1686 | CG42670-PC | 1..1683 | 17..1699 | 8415 | 100 | Plus |
| ps-RR | 2343 | CG42670-PR | 809..2340 | 168..1699 | 7660 | 100 | Plus |
| ps-RQ | 1554 | CG42670-PQ | 20..1551 | 168..1699 | 7660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RC | 2619 | CG8144-RC | 133..1816 | 16..1699 | 8420 | 100 | Plus |
| ps-RR | 3624 | CG42670-RR | 1290..2821 | 168..1699 | 7660 | 100 | Plus |
| ps-RQ | 2492 | CG42670-RQ | 158..1689 | 168..1699 | 7660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445898 | 309..955 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 9445967..9446499 | 951..1483 | 2665 | 100 | Plus |
| 3R | 32079331 | 3R | 9447627..9447846 | 1480..1699 | 1100 | 100 | Plus |
| 3R | 32079331 | 3R | 9436967..9437119 | 16..168 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 9445044..9445188 | 168..312 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:16:14 has no hits.
BO33619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:53:56 Download gff for
BO33619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RC | 139..1816 | 22..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:59 Download gff for
BO33619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RC | 139..1816 | 22..1701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:55 Download gff for
BO33619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RC | 139..1816 | 22..1701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:55 Download gff for
BO33619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9436973..9437118 | 22..167 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 168..311 | 100 | -> | Plus |
| 3R | 9445255..9445895 | 312..952 | 100 | -> | Plus |
| 3R | 9445969..9446497 | 953..1481 | 100 | -> | Plus |
| 3R | 9447629..9447846 | 1482..1701 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:59 Download gff for
BO33619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5262695..5262840 | 22..167 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 168..311 | 100 | -> | Plus |
| arm_3R | 5270977..5271617 | 312..952 | 100 | -> | Plus |
| arm_3R | 5271691..5272219 | 953..1481 | 100 | -> | Plus |
| arm_3R | 5273351..5273568 | 1482..1701 | 99 | | Plus |
BO33619.pep Sequence
Translation from 16 to 1717
> BO33619.pep
MLFARTTSSTSISPPAMMMQQHQQQQQQQDPQKLGQQFHQQPAFQLQQSF
CETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGT
TERVCLITGSTEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQV
KILVPNSTAGMIIGKGGAFIKQIKEESGSYVQISQKPTDVSLQERCITII
GDKENNKNACKMILSKIVEDPQSGTCLNVSYADVSGPVANFNPTGSPYAT
NQNAINSSTASLNSTLGTTIGGANSAASLLVNGTGINLSINLGSPNPAPN
LAVATQLLEHIKVAMRGSGYSETVTNEVVAALSVLAKYGVLGMGVGVSHT
NGAHSTLGNFLGVTTLDQQTAAAASAATASNVFGAVGQVNLEQYAAAVAS
AAAASRPTQSQLDAAAVQFDPFRHLGSATAPAATPVSLNNNSFGLTATTG
TATTAQLGGLSKSPTPGDLSSKDSKNVEVPEVIIGAILGPSGRSLVEIQH
VSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQYLIEQKINEEETKR
ARQIPLTTVVNASFLDH
BO33619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-PC | 561 | CG8144-PC | 1..561 | 1..561 | 2803 | 100 | Plus |
| ps-PD | 583 | CG8144-PD | 1..583 | 1..561 | 2770 | 96.2 | Plus |
| ps-PS | 594 | CG42670-PS | 67..594 | 36..561 | 2538 | 97.3 | Plus |
| ps-PL | 758 | CG16765-PL | 231..758 | 36..561 | 2538 | 97.3 | Plus |
| ps-PR | 780 | CG42670-PR | 271..780 | 52..561 | 2536 | 100 | Plus |
