BO33624.complete Sequence
2029 bp assembled on 2013-05-17
GenBank Submission: KX795130
> BO33624.complete
GAAGTTATCAGTCGACATGCAGGCCGAAGGCGACTCAAGGCGAAAGCGGC
CCAAGAAGAAGGGCAACCGCTTTATGCGGAACGCCAAGGGGTTCGCCAAG
CAGGGGATATTCGGCCGGGGTACGCACATCGACGACGAGCAGTTCAACTA
CTTCATCAACATTCTGGATGCTATGAAAGTGGGATTCGAGGACGTAGAGG
AGCGAGTCATCATGGCCAACAATGTGTTCGAGCAGACCCACGATCAGGAG
ATCCATCTGGCCTCCAATCAGATCGTGTCCAAGGCTCTGGAGTCGTTAGT
GGGCTTCGTGGACGACGTGCAGTTGGAGCGCTTTTTTAGCAAGTTTGGCG
ACAACCTCCGGCCCATGTGCTCCGATCGGTTTGCCTCGCACGTCCTGCAG
AAAATGCTGGAAATCGCCTTTTTGCGCGGAGTGGGAAAATCTGCAGCCCA
GGATACCAGCGATGCAGCTAGCGCCAACAAAAAAGCTAAGCCGGATGCCG
CTCAAGAGGAGGAGGAGTACAACCTGCAGGCGGACTTCACAGATGATCAC
CGCGAGAAGTGCCGGCAGTTCGTTCTTCGCATATCAAAGTTCATGTTGAA
CAATCTGGAGGACTTCGTTTGGGACGCCTGTGCCAGCCACATCATGCGCA
CAGCCATTCTGTGCCTGGTGGGCATGCACGTTCCCAAAATCGCCTTCGAG
AAAGGTGGGACTGAGATAGCCAAGCATAGGAAGATGTACTCTGTGCCGGA
TGAGTGGCAGGAGGTCATGAAGGAGTTCCCCCAGCGCCTGGAGATGTGGC
CCCAGTTCGGCGACTTTCCCTACCAGGATCACTCTTCAAGTCTGCTGGGC
GTCATCTGTTTGGCCCTCAGTGTCGTGGACAAAAGTATGCTCAAGCATTT
TGCCAAGAAAATCCTGACGATCGGTCTGCTGAAGTCGAGCGACGAGGACG
AGGAGAAAATGGAATTGGACACCAAAATCGAAATCAAGGACGAGGATGAT
GATAATGATGAAAAGGAGGATAAGAAGGCGAAAGAAGCAGATGCCGACAC
TGAGAACAAGCAGGAAGAGCCAAAACTACCCAAAGTTTTCCATCATCAAA
GCTCAGTCATTCTGCTCGAAACGATTATGAGCGTAGCGGGAGCCAAATTG
ATGATCCAGCTGTATGCGATGCTCTTCTGCAACCGAATAGGTTACCTAGC
TCGGCAGCCAGGAACGAACTTTTCAGTCCAGCGTCTCCTTCAGCACATCA
AAGAGGTGCCTGATTTCGAGTCCGTTTTCACCGAACTCCAGCCGCATGTG
GAGGAGCTGCTGAAAATGGGATACACCGGCGTCGTGTCCGCCCTCAGTGC
CGCCTGCTTGCGACTGGCCACCAAGCAGTCTCAGATGATAGCCGCTTTGC
AGAGTGCCCTCCATGTCAGTGGCGACAAGGAGAAATCGAAGCTTTTCCTT
ACATGTTTGATTAAGTTAAAGCCCTTTGAGGTGGTGACCGGCGACGAGTC
GGCCTTTGTTCATCTGCACGGTTCGCTTATTACTCAACACCTGCTGCAGT
TCAACAAGCCAATCTTTCTGGTCAACTGTATCCTCGATCTGCCCGCCACC
CAACTGGCTCAGGTCTTCAACACACCCAATGGCTCACACATCGTTGACGC
CTTCATGCAGAGCAAGTTCATCGGCGAGAAGTCCCGCGAGCGTCTGATCC
GCCAGTTGGATGGCTTCTACGTAGACTTGGCCATCACTCGACATGGTTCC
CGCGTCTTCGAACAGTGCTTTAAGGCCGCCCAAGATGCGCAGAAACTGCG
CATGGCCAAGGAACTGTTTTCCAAGGCCAATATGCTGAAAGGCTCACCAC
ACGGTCGGATCATCTACACAAAATACCGCCTGGACACGTACAAGCTTTCA
CCTACGCAATGGCAGGAAAGTTTGTCCAAGCATCTGGACGCCGAGCAGAC
AAAGGAGACGAAGCGGAAAACGGCCAAGACAGCTGTCGAAGCTTTTAAGG
ACATACTTAGCGCAAGCTTTCTAGACCAT
BO33624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 1998 | CG11123-PA | 1..1995 | 17..2011 | 9960 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-RA | 2122 | CG11123-RA | 74..2068 | 17..2011 | 9960 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7441025..7442831 | 205..2011 | 9020 | 99.9 | Plus |
| 2R | 25286936 | 2R | 7440779..7440968 | 17..206 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:38:25 has no hits.
BO33624.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:20 Download gff for
BO33624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 87..2081 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:54 Download gff for
BO33624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 74..2068 | 17..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:51 Download gff for
BO33624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11123-RA | 74..2068 | 17..2013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:51 Download gff for
BO33624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7440779..7440968 | 17..206 | 100 | -> | Plus |
| 2R | 7441027..7442831 | 207..2013 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:54 Download gff for
BO33624.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3328284..3328473 | 17..206 | 100 | -> | Plus |
| arm_2R | 3328532..3330336 | 207..2013 | 99 | | Plus |
BO33624.pep Sequence
Translation from 16 to 2029
> BO33624.pep
MQAEGDSRRKRPKKKGNRFMRNAKGFAKQGIFGRGTHIDDEQFNYFINIL
DAMKVGFEDVEERVIMANNVFEQTHDQEIHLASNQIVSKALESLVGFVDD
VQLERFFSKFGDNLRPMCSDRFASHVLQKMLEIAFLRGVGKSAAQDTSDA
ASANKKAKPDAAQEEEEYNLQADFTDDHREKCRQFVLRISKFMLNNLEDF
VWDACASHIMRTAILCLVGMHVPKIAFEKGGTEIAKHRKMYSVPDEWQEV
MKEFPQRLEMWPQFGDFPYQDHSSSLLGVICLALSVVDKSMLKHFAKKIL
TIGLLKSSDEDEEKMELDTKIEIKDEDDDNDEKEDKKAKEADADTENKQE
EPKLPKVFHHQSSVILLETIMSVAGAKLMIQLYAMLFCNRIGYLARQPGT
NFSVQRLLQHIKEVPDFESVFTELQPHVEELLKMGYTGVVSALSAACLRL
ATKQSQMIAALQSALHVSGDKEKSKLFLTCLIKLKPFEVVTGDESAFVHL
HGSLITQHLLQFNKPIFLVNCILDLPATQLAQVFNTPNGSHIVDAFMQSK
FIGEKSRERLIRQLDGFYVDLAITRHGSRVFEQCFKAAQDAQKLRMAKEL
FSKANMLKGSPHGRIIYTKYRLDTYKLSPTQWQESLSKHLDAEQTKETKR
KTAKTAVEAFKDILSASFLDH
BO33624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11123-PA | 665 | CG11123-PA | 1..665 | 1..665 | 3417 | 100 | Plus |
