BO33642.complete Sequence
3850 bp assembled on 2013-05-17
GenBank Submission: KX799452
> BO33642.complete
GAAGTTATCAGTCGACATGGAACATTCCGATCCCGTGCCTTATCAACAGC
TATCGACATTATCGCCGACCACCGCACTATACTCGAACTTTAACAACTCT
TTGGAAGCAGGAACCGCAGAAAGACTACGCCTTAATAAAACTGGGTCACA
GGTCCACAGCCTATATGTCGGCGACGGTCAAGTGCAAAATGCTTCTGAAC
CCTTATCTTTTCCCAGCCACCTTAATCTGTACCAATATGTTCGTACCCCG
GCAAACTTCACTATTAACAGCCGCAACCGATATATTCCGTACTATAACAA
TCGTTCCTACTCTGCTTCAACAACTGGTTTCCCTATAGCCAGTACTCCGC
TGATCAGCAGCCATGCGCACATCCAAGACCAACAAGGTGCAGCGTCTTAT
CAAACGATTGTTCCGCTTTATCAGACCGCAAGCCACTGTGCGCAGCAACA
TACAACATTGGCATCGGTAGCTCCAATCGTGGACAATTCATTCGTTGAAA
GCACCACTTGCCCCATGGCCGGCATCACCTCTCACAACATCAAAATGAAA
ATGATTCCTCCCAATGTATTGTTGCCTTGCTCCAGGCCTACGACAACCGC
GGTGACCATCCAAAGGTCAACCGGAGAAGACGGTGGAGATAAAGAAGGTC
ATACTTTTGCTAAGATTACGGAGATGAGCGATGCTGTTACTTTGCAGATC
ACCAACTTGGACTACTCGCTGGACGAATCACATATACGCAGCTTTCTACT
TAATCAGCTTAAGCCCATTACGCCAGTTGTGTCACTTGTCTTCGAGGGAA
GCTCCTATGCCAAAGTCACTGTTCCAGATCTTTATTTCGCAAAGCAGGTC
GTCTCCAATTTGCACCGCAAGAAGATTGGACACAAACGCATGCTGGTCAG
TTATACTCGAGATTCCTCCCTCACCGAGGTCAACACACTCCGCTGCCAGG
TCGCAGGACTTCTAAAGGATGTCCCATTCAACACCCTCCCCATGTATAAG
TTTAGAGAACTATTTCAGTCCCGCTTCAAAACCTCTATCAGTGTTTTAGA
TTTGTACAAAATGCAAGACATATGTACCATTAACTCGGATAACAATGAAG
AAAAGTTTATCAGCTTAAATCCGGAATTAGTAAACACCCTCGATATATCC
CCCTTAATGGAAGGACTCCAACATAGTGTTCCTTACTGTAGTATTCATTT
TAAAAAGGAGCAGCACAAGGGATGGGCCGAGCAGGAAATCGAGCCACTAC
CAAACGTCTTCATGAGCATTTCGGAAATTCAGAAACTAATTTATCCACTT
CTCAAGGTACACACGGGGGATATTCCGGTGGCTACCCTTCTTCACTGCGT
TAAAGAAGAGCTTAATGTGTCAATAATGGCGAACGAAAATGGCGTTAACT
TGGAGCATTTGATCTGCTGTGTTCAGGGAATTCAAGTTCGGGCAAACAAT
TTTGGAATTAAAATTCTCGGATGGTTAGAAATAAACAAAGAAATGCAATC
AGGAACTTTTAATGCCAGTTCTAATACATGTAGCCTGACTGCAAGTGATC
GCACAAATTGTGGAAGCTATTTCAAAAACTCAGTTGCCGATCCGCTTTTC
CAAATTTCCCGGGAGGTTATAGAGCTGCTAAAGATGTCACCAAAATCAAC
TATGAAATTCAACCGTTTTATTCCGGCCTACCACAATCACTTTGGAAAGC
AATGTCGAGTTGCAGACTATGGCTATACAAAGTTAATCGAATTGTTTGAG
GCATTATCAAACGTTGTCCAAATTATGGGAGACGGCGAAAATCGTCAAAT
TACGCTATCCCACCGTATTCAAATACGCAGGTTTACATCAGACTTATTGC
GTGTATTGCGCGCTAATGGTAACAACTCAGTCCTGCTTTCCCAGTTGCCA
TTAGTTTTTACACAGACCCAAAATAAAACTTTTGATATTACTGATTATGG
AGTGTGCGACCTTATAGACATTCTAGACGGCTTGGTAAGCTCCAACATCG
TGACTTTAGGCGCAGCACAGAACGGAAAAGATATTCTTATATCAATGCCA
AAACGAAAGCAGACAAACAGTGAATTGGAGAAAACGTGTGTGTTCGCCGG
CGAAATGGTTGAGCTCTTCCAAAACGCTCTTCAGTACACTATTCTATTTC
AGAAGTTTGTACGGTCCTATCATTACCACTTTGCATACCAATGTCGTCTC
AGTGATTACGGCTTTCTTAAATTGGCCGATCTTCTAGATGCAATTAATGG
TTTGGTGGAAATGAAGTTGACAAGTGATGAGGACAAGAAAATAGTTCTCT
CCCCACAAGTAGCTAGAAGAGTTTTCGCTGAACAATGTGAAAACCTAATT
CGCAATGCCACAGGAAACTCATCGCATTGTATGAAGCTAGAACAGGTGCT
GGTATTGCACAAAAAGAAATATGGCTACCAAATTCAGCCGAAAACTTTGG
GAGTCATGGATATGGCTACGGCAGTTGAGCTGTTGCCTTACGTCGAGCTA
AAGAAAAAAGAACAGGCCATTTGGCTCATCTGTCACAACAACGATCATGA
ATTTCGTTTTCTTTGCTATAGGGTGTGTAAGTATGTCATGGAAAGGGACC
CTTCTGCATCAGTTTGGACAAACGTTAGAGGTGAAGTTAAGTTAACTAAA
TCTCAACAATTCGTAAAACCAATTGAAAAAAGCATATTGGTTAGGGATTT
CAATGCTAAGTATAAAGACCATCTTTCAGAGTCAGCTCTTTTAGCCATGC
GACAAGCGATTGAGGTATATGATGATGGTGGCATACAGTGTATTCGTCTT
ACCCGTTTCATGAAGTTTATAATTGCCATTGTGCGTATGCTTGAACAGCG
GCCAAGCATGTATCTCTATGAGATCAAGAATGGTTTAAACTGTGGCCTTA
GCACCACTTTTGAATTCGGATTCCCAAATTTATATTCAGTGGTTGCAGCA
CATAAAGACCTATTCAGTATTAACAACGGACCAACGCAAGAAAGAAGCGA
GGTTTCCATTAATATGAACTGTGAGCTTCGTCAAAGTTCTTTAAGCAAAG
ACCAGTGCGTCCTGGAATCCCAGAAGCTAACAAATTCCAAACATAGAGCA
CAACGGAGCTTCCATAGTCACATTGGCGAGCATAATGGACTTCCAATCAG
TCAGCCCCCCCTGAAACGAAGCGCAACAATCAATAATTGTTCAACATTCC
AAACATATCATGCTGATACCGACATATTTAATGTGCCAGCGAATTGTTTA
CCGCCAAGAACCAACTTATCATTGCCTAATAGTTTCGGATCATCTCTGGA
AAGTGGAAGTTTTTCCAATAGTTACAGCAACAAGGAAAACTCTATGAAAT
CTCTTCACTTGTTCAACAGTTCATTTAATTCGTCTGGCGAGCTAAATGCC
AGTCTAGGCGCAGGAGATTTAACAAATATATCTTTAGGGACAGGTATCGC
AGTTGATACATCAAATGAACCATCCGAACTTTGGCGTAGACGTCAACAAA
ACTTTAATCGCCCTAATTCATCAAATTTTCGTAAATCAGATAATGGAACT
GACGGTACTTACACCATTGGAAATTACATCGCACCACCAATAGGATCCAT
TTACGAGCCACTAAAGTATAATGGTCAAGACAAAGAGAAATTACCCTTTT
GGATTGATCCCATTTGGAGCAAAGGATCGGAACAGCTCAGGCATGACATA
CTTAACATTCGACTTCCTAAGGCCAGAACAACTAAAACGTTTTCCAATAT
ACTTTCGCCTTACACCATTTCGAAAAATGAAAATTTGAAGCGACAGTTGT
TTAGTTTTGATAATCACGATCGTAAAATAGCTGCAAGCTTTCTAGACCAT
BO33642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:38:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RF | 3918 | CG17018-PF | 100..3915 | 17..3832 | 19080 | 100 | Plus |
| CG17018-RE | 3819 | CG17018-PE | 1..3816 | 17..3832 | 19080 | 100 | Plus |
| CG17018-RD | 3918 | CG17018-PD | 100..3915 | 17..3832 | 19080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RF | 4749 | CG17018-RF | 598..4413 | 17..3832 | 19080 | 100 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 644..4459 | 17..3832 | 19080 | 100 | Plus |
| CG17018-RD | 4468 | CG17018-RD | 317..4132 | 17..3832 | 19080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:38:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22365375..22367176 | 966..2767 | 9010 | 100 | Plus |
| 2L | 23513712 | 2L | 22363476..22364294 | 17..835 | 4095 | 100 | Plus |
| 2L | 23513712 | 2L | 22367566..22368176 | 3027..3637 | 3055 | 100 | Plus |
| 2L | 23513712 | 2L | 22367234..22367497 | 2763..3026 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 22368244..22368440 | 3636..3832 | 985 | 100 | Plus |
| 2L | 23513712 | 2L | 22365193..22365325 | 836..968 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:38:34 has no hits.
BO33642.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-17 15:32:21 Download gff for
BO33642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RA | 155..3970 | 17..3834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:10:56 Download gff for
BO33642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 317..4132 | 17..3834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:31:52 Download gff for
BO33642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 317..4132 | 17..3834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:31:52 Download gff for
BO33642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22367236..22367497 | 2765..3026 | 100 | -> | Plus |
| 2L | 22363476..22364294 | 17..835 | 100 | -> | Plus |
| 2L | 22365193..22365324 | 836..967 | 100 | -> | Plus |
| 2L | 22365377..22367173 | 968..2764 | 100 | -> | Plus |
| 2L | 22367566..22368176 | 3027..3637 | 100 | -> | Plus |
| 2L | 22368246..22368440 | 3638..3834 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:10:56 Download gff for
BO33642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22363476..22364294 | 17..835 | 100 | -> | Plus |
| arm_2L | 22365193..22365324 | 836..967 | 100 | -> | Plus |
| arm_2L | 22365377..22367173 | 968..2764 | 100 | -> | Plus |
| arm_2L | 22367236..22367497 | 2765..3026 | 100 | -> | Plus |
| arm_2L | 22367566..22368176 | 3027..3637 | 100 | -> | Plus |
| arm_2L | 22368246..22368440 | 3638..3834 | 98 | | Plus |
BO33642.pep Sequence
Translation from 16 to 3850
> BO33642.pep
MEHSDPVPYQQLSTLSPTTALYSNFNNSLEAGTAERLRLNKTGSQVHSLY
VGDGQVQNASEPLSFPSHLNLYQYVRTPANFTINSRNRYIPYYNNRSYSA
STTGFPIASTPLISSHAHIQDQQGAASYQTIVPLYQTASHCAQQHTTLAS
VAPIVDNSFVESTTCPMAGITSHNIKMKMIPPNVLLPCSRPTTTAVTIQR
STGEDGGDKEGHTFAKITEMSDAVTLQITNLDYSLDESHIRSFLLNQLKP
ITPVVSLVFEGSSYAKVTVPDLYFAKQVVSNLHRKKIGHKRMLVSYTRDS
SLTEVNTLRCQVAGLLKDVPFNTLPMYKFRELFQSRFKTSISVLDLYKMQ
DICTINSDNNEEKFISLNPELVNTLDISPLMEGLQHSVPYCSIHFKKEQH
KGWAEQEIEPLPNVFMSISEIQKLIYPLLKVHTGDIPVATLLHCVKEELN
VSIMANENGVNLEHLICCVQGIQVRANNFGIKILGWLEINKEMQSGTFNA
SSNTCSLTASDRTNCGSYFKNSVADPLFQISREVIELLKMSPKSTMKFNR
FIPAYHNHFGKQCRVADYGYTKLIELFEALSNVVQIMGDGENRQITLSHR
IQIRRFTSDLLRVLRANGNNSVLLSQLPLVFTQTQNKTFDITDYGVCDLI
DILDGLVSSNIVTLGAAQNGKDILISMPKRKQTNSELEKTCVFAGEMVEL
FQNALQYTILFQKFVRSYHYHFAYQCRLSDYGFLKLADLLDAINGLVEMK
LTSDEDKKIVLSPQVARRVFAEQCENLIRNATGNSSHCMKLEQVLVLHKK
KYGYQIQPKTLGVMDMATAVELLPYVELKKKEQAIWLICHNNDHEFRFLC
YRVCKYVMERDPSASVWTNVRGEVKLTKSQQFVKPIEKSILVRDFNAKYK
DHLSESALLAMRQAIEVYDDGGIQCIRLTRFMKFIIAIVRMLEQRPSMYL
YEIKNGLNCGLSTTFEFGFPNLYSVVAAHKDLFSINNGPTQERSEVSINM
NCELRQSSLSKDQCVLESQKLTNSKHRAQRSFHSHIGEHNGLPISQPPLK
RSATINNCSTFQTYHADTDIFNVPANCLPPRTNLSLPNSFGSSLESGSFS
NSYSNKENSMKSLHLFNSSFNSSGELNASLGAGDLTNISLGTGIAVDTSN
EPSELWRRRQQNFNRPNSSNFRKSDNGTDGTYTIGNYIAPPIGSIYEPLK
YNGQDKEKLPFWIDPIWSKGSEQLRHDILNIRLPKARTTKTFSNILSPYT
ISKNENLKRQLFSFDNHDRKIAASFLDH
BO33642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-PF | 1305 | CG17018-PF | 34..1305 | 1..1272 | 6616 | 100 | Plus |
| CG17018-PE | 1272 | CG17018-PE | 1..1272 | 1..1272 | 6616 | 100 | Plus |
| CG17018-PD | 1305 | CG17018-PD | 34..1305 | 1..1272 | 6616 | 100 | Plus |
| CG17018-PC | 1294 | CG17018-PC | 23..1294 | 1..1272 | 6616 | 100 | Plus |
| CG17018-PA | 1272 | CG17018-PA | 1..1272 | 1..1272 | 6616 | 100 | Plus |
