BO33707.complete Sequence
1297 bp assembled on 2013-04-18
GenBank Submission: KX797550
> BO33707.complete
GAAGTTATCAGTCGACATGGAGGAAGACGAGAGGGGCAAACTTTTTGTGG
GCGGTCTATCCTGGGAGACGACGCAGGAGAACCTGTCGCGCTACTTCTGC
CGCTTCGGGGACATCATTGACTGTGTGGTGATGAAGAACAACGAGAGCGG
CAGGTCGCGCGGCTTTGGCTTCGTTACCTTCGCCGATCCCACCAACGTCA
ACCACGTGCTGCAGAACGGACCGCACACGCTCGACGGTCGCACCATCGAC
CCCAAGCCGTGCAATCCGCGCACTCTGCAGAAACCGAAGAAGGGCGGCGG
CTACAAGGTCTTCCTGGGTGGCCTGCCCTCGAACGTCACCGAGACCGATC
TGCGGACCTTCTTTAACCGCTACGGCAAGGTCACCGAGGTGGTTATCATG
TACGACCAGGAGAAGAAGAAGTCCCGCGGCTTCGGCTTTCTCTCCTTCGA
GGAGGAGTCCTCCGTTGAGCACGTGACCAACGAGCGGTACATCAATCTGA
ATGGCAAGCAGGTCGAAATCAAGAAGGCCGAGCCTCGTGATGGATCTGGC
GGCCAAAACTCCAACAACAGTACCGTGGGAGGCGCCTATGGCAAGCTTGG
TAACGAGTGCAGCCACTGGGGACCGCACCATGCTCCCATCAACATGATGC
AGGGCCAGAATGGCCAGATGGGTGGACCGCCGCTGAATATGCCCATTGGA
GCGCCGAATATGATGCCTGGCTATCAGGGTTGGGGCACCTCGCCGCAGCA
GCAACAATACGGCTACGGCAACAGTGGCCCAGGATCGTACCAGGGATGGG
GAGCTCCACCAGGACCCCAGGGACCACCACCGCAGTGGTCGAACTACGCT
GGACCTCAGCAGACGCAGGGCTACGGCGGATACGACATGTATAACTCGAC
GTCGACCGGAGCTCCTTCGGGACCATCGGGCGGCGGCAGCTGGAACTCGT
GGAACATGCCACCTAACTCTGCCGGACCCACTGGGGCACCAGGAGCCGGA
GCGGGCACCGCCACTGACATGTACTCGCGTGCTCAAGCCTGGGCGACGGG
CGGTCCCTCGACCACTGGACCAGTGGGCGGCATGCCCCGGACCGGACCCG
GTAATTCGGCCTCCAAGTCTGGCTCTGAGTACGACTACGGCGGCTATGGA
TCCGGGTACGACTACGACTACAGCAACTATGTGAAGCAGGAGGGCGCCTC
GAACTACGGAGCAGGGCCGCGATCAGCGTACGGCAACGACAGCTCCACGC
AGCCACCCTATGCAACCTCGCAGGCTGTCGCAAGCTTTCTAGACCAT
BO33707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb27C-RE | 1266 | CG10377-PE | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| Hrb27C-RD | 1266 | CG10377-PD | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| Hrb27C-RH | 1266 | CG10377-PH | 1..1263 | 17..1279 | 6315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb27C-RE | 2110 | CG10377-RE | 253..1516 | 16..1279 | 6320 | 100 | Plus |
| Hrb27C-RD | 2137 | CG10377-RD | 280..1543 | 16..1279 | 6320 | 100 | Plus |
| Hrb27C-RH | 8240 | CG10377-RH | 372..1635 | 16..1279 | 6320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6924682..6925452 | 509..1279 | 3855 | 100 | Plus |
| 2L | 23513712 | 2L | 6923905..6924402 | 16..513 | 2490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:16:26 has no hits.
BO33707.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:57:09 Download gff for
BO33707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb27C-RB | 352..1614 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:06 Download gff for
BO33707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb27C-RH | 373..1635 | 17..1281 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:00 Download gff for
BO33707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrb27C-RH | 373..1635 | 17..1281 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:00 Download gff for
BO33707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6923906..6924400 | 17..511 | 100 | -> | Plus |
| 2L | 6924685..6925452 | 512..1281 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:06 Download gff for
BO33707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6923906..6924400 | 17..511 | 100 | -> | Plus |
| arm_2L | 6924685..6925452 | 512..1281 | 99 | | Plus |
BO33707.pep Sequence
Translation from 16 to 1297
> BO33707.pep
MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGF
GFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFL
GGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV
EHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSH
WGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYGY
GNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAP
SGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTT
GPVGGMPRTGPGNSASKSGSEYDYGGYGSGYDYDYSNYVKQEGASNYGAG
PRSAYGNDSSTQPPYATSQAVASFLDH
BO33707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:07:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrb27C-PE | 421 | CG10377-PE | 1..421 | 1..421 | 2342 | 100 | Plus |
| Hrb27C-PD | 421 | CG10377-PD | 1..421 | 1..421 | 2342 | 100 | Plus |
| Hrb27C-PH | 421 | CG10377-PH | 1..421 | 1..421 | 2342 | 100 | Plus |
| Hrb27C-PG | 421 | CG10377-PG | 1..421 | 1..421 | 2342 | 100 | Plus |
| Hrb27C-PF | 421 | CG10377-PF | 1..421 | 1..421 | 2342 | 100 | Plus |
