BO33708.complete Sequence
829 bp assembled on 2013-01-15
GenBank Submission: KX797160
> BO33708.complete
GAAGTTATCAGTCGACATGAGTACAGTCGCAAGCAACGATCAGCACGTGG
ACACCGGCGTATTGCCGGTGCCCAGCACGAACAGCCCTAGCTCCCAGATC
GAGCAGAAGGGCAATGAAGCAATCGTGCCCAACTACAAGGCTGCTACTGC
CGGCGAGCAGGGCGAGGCACAGGCTGGAGCTACCTGCACTACAGTCGCTG
TTCGTCCGTCAGGTGTTGCCACCTCTGCCGACATAGTGAAAGGGTCATCA
TCTGTGAGCAGCCACGTGCAGCCGTCATGGCGGAGCTCCTTCGCCAGGTC
CCAGGACAAGAAGTGCGGCATTTGCTTCGAGACGATCATGGAGAAGGAGG
GAGGAGATAAGCGTTTCGGCATCCTGCCCAGCTGCAACCACGTGTTCTGC
TTCCAGTGCATTTGCACATGGCGTCATGCCACACAGTATGCCTATCAAGT
GACGCGAGCTTGCCCCGAATGTCGCGTGTGGTCTAACTTTGTATGTCCCA
GTGCATTTTGGGTGGAGGAAAAGGTGGCGAAGGACCAGCTCATCAATGAT
CACCTCGCCGCTATGCGTGCAAGGGACTGCAAGTACTTTAAACAAGGACA
AGGCGTGTGCCTCTTTGGCAACAAGTGTTTTTACAAGCACTCTATACCCA
ACGCAGATTACGTCGATGTGGGATTGCCGACCCATGCTCTAGGGCTACCG
ATTCCATCAGATTTTTCGGGACTTGGCAATTGTCTTATTTTGGTTCCTTT
CCCGAATATGTTTTTTGATGATTTCAGCAATTCCGACGACTACGATTTCT
CGGACGTAAACGCAAGCTTTCTAGACCAT
BO33708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 798 | CG12477-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
| Mkrn1-RC | 1161 | CG7184-PC | 619..1006 | 293..680 | 860 | 81.4 | Plus |
| Mkrn1-RB | 1161 | CG7184-PB | 619..1006 | 293..680 | 860 | 81.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-RA | 1325 | CG12477-RA | 91..885 | 17..811 | 3975 | 100 | Plus |
| Mkrn1-RC | 2229 | CG7184-RC | 824..1211 | 293..680 | 860 | 81.4 | Plus |
| Mkrn1-RB | 2163 | CG7184-RB | 758..1145 | 293..680 | 860 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:09:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18722333..18723127 | 811..17 | 3975 | 100 | Minus |
| 3L | 28110227 | 3L | 21531808..21532032 | 680..456 | 495 | 81.3 | Minus |
| 3L | 28110227 | 3L | 21532358..21532502 | 437..293 | 395 | 84.8 | Minus |
| X | 23542271 | X | 14777334..14777576 | 293..535 | 270 | 74.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:09:07 has no hits.
BO33708.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:46 Download gff for
BO33708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..885 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:21 Download gff for
BO33708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..885 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:14 Download gff for
BO33708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12477-RA | 91..885 | 17..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:14 Download gff for
BO33708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18722331..18723127 | 17..813 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:21 Download gff for
BO33708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18715431..18716227 | 17..813 | 99 | | Minus |
BO33708.pep Sequence
Translation from 16 to 829
> BO33708.pep
MSTVASNDQHVDTGVLPVPSTNSPSSQIEQKGNEAIVPNYKAATAGEQGE
AQAGATCTTVAVRPSGVATSADIVKGSSSVSSHVQPSWRSSFARSQDKKC
GICFETIMEKEGGDKRFGILPSCNHVFCFQCICTWRHATQYAYQVTRACP
ECRVWSNFVCPSAFWVEEKVAKDQLINDHLAAMRARDCKYFKQGQGVCLF
GNKCFYKHSIPNADYVDVGLPTHALGLPIPSDFSGLGNCLILVPFPNMFF
DDFSNSDDYDFSDVNASFLDH
BO33708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12477-PA | 265 | CG12477-PA | 1..265 | 1..265 | 1442 | 100 | Plus |
| Mkrn1-PC | 386 | CG7184-PC | 205..384 | 91..263 | 544 | 54.4 | Plus |
| Mkrn1-PB | 386 | CG7184-PB | 205..384 | 91..263 | 544 | 54.4 | Plus |
| Mkrn1-PA | 386 | CG7184-PA | 205..384 | 91..263 | 544 | 54.4 | Plus |
| CG5347-PA | 285 | CG5347-PA | 55..268 | 18..208 | 438 | 43.9 | Plus |
