BO33709.complete Sequence
922 bp assembled on 2012-12-20
GenBank Submission: KX798155
> BO33709.complete
GAAGTTATCAGTCGACATGGCATACGTTGCACTGAGCGAAGCTGAAAAAA
CATATATTCTACACGGCGTGGAGGATGACTTTCGTTGCGATGGACGTTCA
CGACGAGATTACCGGCCCATGGACCTGGAAACTGGACTGGTTAGCAATGC
CAGTGGATCCGCTCGCCTTCGGCTGGCGAACACAGACATACTGGTGGGCG
TCAAAACCGAGATTGATGTACCCAACCCGCTGACGCCCGAGTTTGGTAAA
CTGGAATTTTTTGTGGATTGCTCTGCTAATGCCACGCCGGAGTTTGAAGG
ACGCGGGGGCTCGGATCTGGCCCAAGAACTTATTCTCTCCCTGCAGAACG
CCTACGAATCGCCATTGGCCTTCAACTACCGCACGTTGTGCCTCATTCCG
GGTCAGCAGTGCTGGAAGCTGTACATAGACATCCTGATTCTGGAGTGTGG
CGGCAATCTACACGACGCAGTGTCGCTGGCCGCCAAAGCGGCTCTGTTCA
ACACAAAGCTGCCCCGGGTGACAGCCACCATGTTGGATGCCGGCATCACA
GACCTCATCATATCGGACAATCCGTATGACTGCACCCGCATCGGCATCGA
GACGGTTCCGCTGTTGGTCACAGTTTGCAAGATCGGTGATTATGTCCTGG
TGGATCCTTCGGCGGAGGAGGAAGTCTGCAGCACAGTGAGCATGGTTGTG
TCAGTTTCCATGCGGAATGGACAGGCATTCCTTTCGGGTACACACTTGAC
CGGCGGCGGAGCCATGCACCGGGACACCATGCGCAACTGTCTGGAGCTGG
GTCTGGCCATTGGCGAGCATCTGGACCGGCTGCTCACTAAAATGCTAAAT
CTGGAGCAGCAGCGCGTCGGACTCAAGCGACCGCAAATAGTAGGATTTCT
TAAAGCAAGCTTTCTAGACCAT
BO33709.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp42-RA | 891 | CG8395-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp42-RA | 981 | CG8395-RA | 71..958 | 17..904 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16015559..16016027 | 436..904 | 2345 | 100 | Plus |
2R | 25286936 | 2R | 16015090..16015288 | 72..270 | 995 | 100 | Plus |
2R | 25286936 | 2R | 16015339..16015505 | 270..436 | 835 | 100 | Plus |
2R | 25286936 | 2R | 16014978..16015035 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:02:52 has no hits.
BO33709.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:32 Download gff for
BO33709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp42-RA | 1..888 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:10 Download gff for
BO33709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp42-RA | 71..958 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:06 Download gff for
BO33709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rrp42-RA | 71..958 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:06 Download gff for
BO33709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16014978..16015034 | 17..73 | 100 | -> | Plus |
2R | 16015092..16015288 | 74..270 | 100 | -> | Plus |
2R | 16015340..16015505 | 271..436 | 100 | -> | Plus |
2R | 16015560..16016027 | 437..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:10 Download gff for
BO33709.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11902483..11902539 | 17..73 | 100 | -> | Plus |
arm_2R | 11902597..11902793 | 74..270 | 100 | -> | Plus |
arm_2R | 11902845..11903010 | 271..436 | 100 | -> | Plus |
arm_2R | 11903065..11903532 | 437..906 | 99 | | Plus |
BO33709.pep Sequence
Translation from 16 to 922
> BO33709.pep
MAYVALSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSAR
LRLANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSD
LAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHD
AVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL
VTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAM
HRDTMRNCLELGLAIGEHLDRLLTKMLNLEQQRVGLKRPQIVGFLKASFL
DH
BO33709.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rrp42-PA | 296 | CG8395-PA | 1..296 | 1..296 | 1525 | 100 | Plus |