Clone BO33709 Report

Search the DGRC for BO33709

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:337
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptRrp42-RA
Protein status:BO33709.pep: Imported from assembly
Sequenced Size:922

Clone Sequence Records

BO33709.complete Sequence

922 bp assembled on 2012-12-20

GenBank Submission: KX798155

> BO33709.complete
GAAGTTATCAGTCGACATGGCATACGTTGCACTGAGCGAAGCTGAAAAAA
CATATATTCTACACGGCGTGGAGGATGACTTTCGTTGCGATGGACGTTCA
CGACGAGATTACCGGCCCATGGACCTGGAAACTGGACTGGTTAGCAATGC
CAGTGGATCCGCTCGCCTTCGGCTGGCGAACACAGACATACTGGTGGGCG
TCAAAACCGAGATTGATGTACCCAACCCGCTGACGCCCGAGTTTGGTAAA
CTGGAATTTTTTGTGGATTGCTCTGCTAATGCCACGCCGGAGTTTGAAGG
ACGCGGGGGCTCGGATCTGGCCCAAGAACTTATTCTCTCCCTGCAGAACG
CCTACGAATCGCCATTGGCCTTCAACTACCGCACGTTGTGCCTCATTCCG
GGTCAGCAGTGCTGGAAGCTGTACATAGACATCCTGATTCTGGAGTGTGG
CGGCAATCTACACGACGCAGTGTCGCTGGCCGCCAAAGCGGCTCTGTTCA
ACACAAAGCTGCCCCGGGTGACAGCCACCATGTTGGATGCCGGCATCACA
GACCTCATCATATCGGACAATCCGTATGACTGCACCCGCATCGGCATCGA
GACGGTTCCGCTGTTGGTCACAGTTTGCAAGATCGGTGATTATGTCCTGG
TGGATCCTTCGGCGGAGGAGGAAGTCTGCAGCACAGTGAGCATGGTTGTG
TCAGTTTCCATGCGGAATGGACAGGCATTCCTTTCGGGTACACACTTGAC
CGGCGGCGGAGCCATGCACCGGGACACCATGCGCAACTGTCTGGAGCTGG
GTCTGGCCATTGGCGAGCATCTGGACCGGCTGCTCACTAAAATGCTAAAT
CTGGAGCAGCAGCGCGTCGGACTCAAGCGACCGCAAATAGTAGGATTTCT
TAAAGCAAGCTTTCTAGACCAT

BO33709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-RA 891 CG8395-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-RA 981 CG8395-RA 71..958 17..904 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16015559..16016027 436..904 2345 100 Plus
2R 25286936 2R 16015090..16015288 72..270 995 100 Plus
2R 25286936 2R 16015339..16015505 270..436 835 100 Plus
2R 25286936 2R 16014978..16015035 17..74 290 100 Plus
Blast to na_te.dros performed on 2014-11-28 13:02:52 has no hits.

BO33709.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:32 Download gff for BO33709.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 1..888 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:10 Download gff for BO33709.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 71..958 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:06 Download gff for BO33709.complete
Subject Subject Range Query Range Percent Splice Strand
Rrp42-RA 71..958 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:06 Download gff for BO33709.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16014978..16015034 17..73 100 -> Plus
2R 16015092..16015288 74..270 100 -> Plus
2R 16015340..16015505 271..436 100 -> Plus
2R 16015560..16016027 437..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:10 Download gff for BO33709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11902483..11902539 17..73 100 -> Plus
arm_2R 11902597..11902793 74..270 100 -> Plus
arm_2R 11902845..11903010 271..436 100 -> Plus
arm_2R 11903065..11903532 437..906 99   Plus

BO33709.pep Sequence

Translation from 16 to 922

> BO33709.pep
MAYVALSEAEKTYILHGVEDDFRCDGRSRRDYRPMDLETGLVSNASGSAR
LRLANTDILVGVKTEIDVPNPLTPEFGKLEFFVDCSANATPEFEGRGGSD
LAQELILSLQNAYESPLAFNYRTLCLIPGQQCWKLYIDILILECGGNLHD
AVSLAAKAALFNTKLPRVTATMLDAGITDLIISDNPYDCTRIGIETVPLL
VTVCKIGDYVLVDPSAEEEVCSTVSMVVSVSMRNGQAFLSGTHLTGGGAM
HRDTMRNCLELGLAIGEHLDRLLTKMLNLEQQRVGLKRPQIVGFLKASFL
DH

BO33709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp42-PA 296 CG8395-PA 1..296 1..296 1525 100 Plus