BO33711.complete Sequence
1411 bp assembled on 2012-12-20
GenBank Submission: KX794455
> BO33711.complete
GAAGTTATCAGTCGACATGATGACTGAAAAGTTAAATTCTGGGCACACTA
ATTTAACAAGCAAGGGGATTATAAATGATCTTCAAATTGCTGGAAACACA
AGTGACGATATGGGCTGGAAATCAAAGCTGAAGCTGCCGCCAAAGGACAA
CCGATTCAAAACAACTGATGTGACCGATACGCGAGGCAATGAATTCGAGG
AGTTTTGCCTTAAAAGAGAACTGCTTATGGGTATATTCGAGAAGGGATGG
GAGCGCCCTTCGCCAATTCAGGAAGCAGCTATTCCTATAGCATTAAGTGG
AAAAGATGTGCTGGCTCGGGCCAAGAACGGCACAGGCAAGACAGGAGCCT
ACTGCATCCCAGTTTTAGAACAAATCGACCCAACCAAGGACTACATTCAG
GCACTTGTGATGGTCCCCACCCGAGAGTTGGCGCTACAAACCTCACAGAT
ATGTATTGAGCTGGCGAAACATCTTGATATCCGGGTAATGGTCACAACGG
GAGGTACCATTCTAAAGGATGACATTCTTCGTATTTATCAAAAAGTACAA
TTAATTATTGCCACTCCCGGACGAATATTAGATCTGATGGATAAGAAAGT
TGCCGATATGTCGCATTGCAGAATATTAGTTTTGGATGAGGCCGATAAGC
TATTGTCGCTTGATTTTCAAGGCATGCTGGATCATGTTATACTAAAGTTA
CCAAAGGATCCACAGATCTTGCTATTTTCCGCAACATTTCCACTAACAGT
CAAGAATTTCATGGAGAAGCATTTACGCGAGCCTTACGAGATCAACCTGA
TGGAGGAGCTAACACTGAAGGGTGTCACTCAGTACTATGCATTCGTACAG
GAGCGCCAGAAAGTACACTGCTTGAATACGCTCTTTTCGAAGCTGCAGAT
CAATCAGTCTATCATATTCTGCAATTCCACGCAACGTGTCGAGCTATTGG
CCAAAAAGATCACAGAGCTTGGATATTGCTGTTACTATATACACGCTAAG
ATGGCCCAGGCACACAGAAATCGAGTATTCCACGATTTCCGCCAAGGACT
CTGTCGCAATCTGGTGTGCTCCGACCTGTTCACCCGTGGTATCGACGTGC
AGGCCGTGAATGTAGTAATCAATTTCGATTTCCCACGAATGGCAGAGACA
TACTTGCATCGAATTGGTCGCTCAGGACGTTTCGGTCATTTGGGTATTGC
TATTAATCTGATAACCTACGAGGATCGGTTTGATCTGCATCGGATTGAAA
AAGAACTTGGAACCGAAATAAAGCCTATTCCGAAGGTCATAGACCCCGCC
CTTTATGTCGCAAACGTTGGCGCATCCGTTGGCGATACTTGCAACAACAG
TGATCTGAATAATTCTGCGAACGAGGAGGGCAACGTTAGCAAAGCAAGCT
TTCTAGACCAT
BO33711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| me31B-RA | 1380 | CG4916-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
| me31B-RB | 1287 | CG4916-PB | 1..1284 | 110..1393 | 6420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| me31B-RA | 1699 | CG4916-RA | 196..1572 | 17..1393 | 6885 | 100 | Plus |
| me31B-RB | 1600 | CG4916-RB | 146..1473 | 66..1393 | 6640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10241131..10241782 | 544..1195 | 3260 | 100 | Plus |
| 2L | 23513712 | 2L | 10240680..10241058 | 167..545 | 1895 | 100 | Plus |
| 2L | 23513712 | 2L | 10241845..10242045 | 1193..1393 | 1005 | 100 | Plus |
| 2L | 23513712 | 2L | 10240491..10240592 | 66..167 | 510 | 100 | Plus |
| 2L | 23513712 | 2L | 10239536..10239586 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:02:48 has no hits.
BO33711.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:31 Download gff for
BO33711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| me31B-RA | 211..1587 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:07 Download gff for
BO33711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| me31B-RA | 196..1572 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:05 Download gff for
BO33711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| me31B-RA | 196..1572 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:05 Download gff for
BO33711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10239536..10239585 | 17..66 | 100 | -> | Plus |
| 2L | 10240492..10240591 | 67..166 | 100 | -> | Plus |
| 2L | 10240680..10241058 | 167..545 | 100 | -> | Plus |
| 2L | 10241133..10241780 | 546..1193 | 100 | -> | Plus |
| 2L | 10241846..10242045 | 1194..1395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:07 Download gff for
BO33711.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10239536..10239585 | 17..66 | 100 | -> | Plus |
| arm_2L | 10240492..10240591 | 67..166 | 100 | -> | Plus |
| arm_2L | 10240680..10241058 | 167..545 | 100 | -> | Plus |
| arm_2L | 10241133..10241780 | 546..1193 | 100 | -> | Plus |
| arm_2L | 10241846..10242045 | 1194..1395 | 99 | | Plus |
BO33711.pep Sequence
Translation from 16 to 1411
> BO33711.pep
MMTEKLNSGHTNLTSKGIINDLQIAGNTSDDMGWKSKLKLPPKDNRFKTT
DVTDTRGNEFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLA
RAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELA
KHLDIRVMVTTGGTILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSH
CRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFME
KHLREPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQINQSII
FCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLV
CSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLIT
YEDRFDLHRIEKELGTEIKPIPKVIDPALYVANVGASVGDTCNNSDLNNS
ANEEGNVSKASFLDH
BO33711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| me31B-PA | 459 | CG4916-PA | 1..459 | 1..459 | 2381 | 100 | Plus |
| me31B-PB | 428 | CG4916-PB | 1..428 | 32..459 | 2223 | 100 | Plus |
| eIF-4a-PF | 403 | CG9075-PF | 30..396 | 58..422 | 705 | 40.1 | Plus |
| eIF-4a-PE | 403 | CG9075-PE | 30..396 | 58..422 | 705 | 40.1 | Plus |
| eIF-4a-PD | 403 | CG9075-PD | 30..396 | 58..422 | 705 | 40.1 | Plus |
