BO33713.complete Sequence
2914 bp assembled on 2013-01-24
GenBank Submission: KX794590
> BO33713.complete
GAAGTTATCAGTCGACATGGACGTGCAACCGCCACGCGATGCCAGTTTAC
GAAATATTATCGACAAACTGGCGGAGTTTGTGGCCAGAAATGGGCCGGAA
TTCGAGGCGATAACCAAGCAGAAGCAGCAGAACAATCCAAAGTTCGAGTT
CCTCTACGGCGGGGAGTTCGCCAACTATTATCAATTCAGGGTGGCAGCGG
AACAAGCTCTGCTAAAGCAACAGGCCATTAACCAACAACTGCCACCAGGT
GCTCCATCCGGCCACTACATGCAACATCCGCCGCCAATGCAGCAATCCCA
ACCACCGGGCCTCTATCCGCCACCCAATCAGCAGCCACCGCACCCGCCCG
AAACCGCACAAGACAATATGCAACAGCAAACACAGCACTCCTGGCCGCCG
AACTCCGGCAACGGTGGGCCGCCAAACAATCAGCAGGCCAATGGCAATCC
CATGGCCATGAATCTAACGTCACAACTGGAAGCCATCAAGATGCAGCAGA
AGTCGCTGCGGGAACAGATCCAGCAATCCGAAGCGAATCTCTCCGCACAG
CACACGGCCCTGATGAATCAGAAGACCAAGCAGATCGAGGATGCAATTGC
GGCGGCGCAGACGGCGCAGCAGGAACAGATGGCTGGCGAACAGGGCATTG
TGCTGAGGGACTTCGATGGCGTTCTGCAGCCGATCATCGAGTCCTGCACG
AAGGACAGCATCTCTGCAGGCAAGAACTGGATTTTACAGCATTCAACCGA
CAGCGCAAAAATCAATGTCGTTTTACAATATCTTTTAAAGAAGGCTTTGG
TCAATGGTTCAACGTTTCAGCAAAAATTGCATCTTATATATTTAGTTAAT
GATATACTCCATCACTGCATGCGCAAGAACATCAATGACTTGAAGAACAG
CCTCGAGAACGTCGTCATTCCGATGTTCTGCAGCGCCGACTTGATTGGCA
ACCCCGACCAGCGCCAGAAGCTAGCCAAGCTGCTGTCTCTGTGGGAGTCC
AAGGCGAAGTTCTTCGATGCCTGCGTCATCTCGAAGCTTCAGTCACCGGA
CTCGTCAATGCAGGAGTACAAAACCAATCTGCAGAACACACATCATGATA
TAACTGCTAAATTCACGCAGAATACCAAGGCGACTTTGGATAACTATCAG
AAACAGCATCATGTATTTATCCAACATGCTAGCCAGCAAATTGTGCAGCT
GGAGAAACAGGCGCAGCACCTGGAGCAGCAGATTGTGGCCCAGAAGTCCC
AGCAGCAACACATGCTTCAGCATCAGCAGAAGAACATACCATCGCTGATG
TCCCACCGAATAGCAATGCCGGGTGACCATGAGCACATGAATAGCCAGGG
GCCGCATGATCAGCAGCATCCGCAGGCGGGAAATAATATGTATCCAGGTG
GTAACTTCCAACAGCAGCAGCCACCACCGGGGAATCACTTTGCGGATCCA
CGCGGACCGAACTTCTTCATTCCGGACATGTCCAAACCACCACCAGGCTT
CCCCGGACCCATGCATCATAATCAGGGCCCAGCAATGGGCCAGCAGCAGC
CACAACCGGGACAGTTTCCGCCCATGCAGGCGCCGGGTTCTGGCAATGAA
CCACCTGTTGATCTTGGCGTTCTCAGTGCAGCGATTCAGGCGTGCTTACA
GATGCAGCAGCAACACCATCCTGACGACCCTCAGCAACAAGGACAGCACC
AACTGCAGCAGCAGCAGCAGCAACAACCGCAGCAGCAAAAGCAGCCGCCG
CCAATGGCTGCCTATCCCCAGAATATTGTTAGACCTGGCCAGCAAAATGC
TGATAGCAGCGAAGTGGATCTGGATGTGCTCAATGCAGCCATTCGCGCGG
TTATAACCAACAAACCCGAAGACGGAACATTGGAAGATGGCCAGCAACCA
CAGAAATTGGTCGACGGAGAATCTGGAGAACCTGTTGTGATCGGAGAGCC
ACAAATACCCACAGCGCCTTACTACGACCTGCCAGCGGGCCTCATGGTGC
CGCTCATTCGTCTGGAGGATTACAACTACAAAGCCCTCGATCCGGCGGAC
ATTCGACTGCCAGCTCCAGCGCCACAAAGCGAGCGATTAACAAATGCATT
GAACGCCTTCTATTCCGCACCCTCACACGATCGTCCAAGGGATAATGAGG
GTTGGGAGAAGCTTGGTCTCTATGAGTACTATAAGGTGAAGAATGCGGCG
CGAAAGCAAAAAGAAGAGGAAATCAAGGACGGCATTCGAGAAAAGTCGCG
GTCGCCAAGTCCGATTGTGCTCGAGAAACCCCTACCCAAAAAGAGCAACA
AGCGAGTTTATCGATCCAAGAGTCGCAGTCGCTCCCGCTCAAAAACGCCG
CCCCATCGAGATAGATCGTTGTCTCGCTCCCGATCCCGCTCGCGATCCAT
GGAGCGCTCTTTAACGCCGCCACCGATGAATCGGAGCAGGTTGGGCGGTG
GTAACAACCGCAAGGGTCGCAATCGATCTCCTCGCCACGAACGGGACAAC
AACAGCGGCAGCACAAATACCAGAGAGGGCCGTGGTGATCGTGGCAATTC
CAATAGCCGAGACAATGGCAACAGCACCAACCTAAGACGAGTGGACCGCG
ACAGATCTCTAACACCTCCGAGCTTTCTGGGAAGCACATTTGCCAAGCCA
GCGGATTTCATCGAGGAATCGAACAAGGGCCACCAAATGCTCATGAAAAT
GGGTTGGGCGGGCACGGGAACTGGACTGGGCTCAAAGAATCAAGGCATCG
ACACGCCCATTTCGGGAGGCGAGGTGCGCGATCGTCGAGAGATGTACAAG
GGAGTGGGCGCTAATATGCACGATCCCTTCGAGAGCTTTCGGAAGAACAA
AGGAGCTGCCTTCGCGCACCGGATGCGATCGCGAGACGACAAGAGTGCAA
GCTTTCTAGACCAT
BO33713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RA | 2883 | CG33522-PA | 1..2880 | 17..2896 | 14400 | 100 | Plus |
| scaf6-RE | 756 | CG33522-PE | 1..704 | 17..720 | 3520 | 100 | Plus |
| scaf6-RC | 549 | CG33522-PC | 1..541 | 17..557 | 2705 | 100 | Plus |
| scaf6-RE | 756 | CG33522-PE | 704..756 | 793..845 | 265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-RA | 3071 | CG33522-RA | 116..2995 | 17..2896 | 14400 | 100 | Plus |
| scaf6-RE | 2998 | CG33522-RE | 819..2922 | 793..2896 | 10520 | 100 | Plus |
| scaf6-RE | 2998 | CG33522-RE | 116..819 | 17..720 | 3520 | 100 | Plus |
| scaf6-RC | 1415 | CG33522-RC | 116..656 | 17..557 | 2705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17037931..17038932 | 2145..1144 | 5010 | 100 | Minus |
| 3L | 28110227 | 3L | 17041693..17042040 | 557..210 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 17037319..17037635 | 2629..2313 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 17038995..17039193 | 1143..945 | 995 | 100 | Minus |
| 3L | 28110227 | 3L | 17037083..17037255 | 2801..2629 | 865 | 100 | Minus |
| 3L | 28110227 | 3L | 17042103..17042274 | 209..38 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 17037706..17037873 | 2313..2146 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 17040438..17040602 | 720..556 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 17036935..17037032 | 2896..2799 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 17039257..17039334 | 944..867 | 390 | 100 | Minus |
| 3L | 28110227 | 3L | 17040137..17040212 | 793..718 | 380 | 100 | Minus |
| 3L | 28110227 | 3L | 17039556..17039630 | 867..793 | 375 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6650..6815 | 1590..1751 | 244 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6836 | 1648..1751 | 241 | 70.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6978 | 1648..1783 | 237 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6766..6880 | 1648..1763 | 235 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2418 | 1655..1748 | 227 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6923 | 1648..1745 | 220 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6811..6900 | 1654..1743 | 216 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2442 | 1648..1745 | 211 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6884 | 1648..1748 | 210 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2839 | 1196..1746 | 209 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6848 | 1648..1751 | 205 | 66.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2482 | 1655..1737 | 190 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2539 | 1649..1740 | 177 | 68.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1061..1152 | 1196..1286 | 151 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6888 | 1196..1286 | 142 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2842..2937 | 1650..1745 | 138 | 60.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6872 | 1146..1289 | 137 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2776..2883 | 1647..1745 | 134 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1149 | 1171..1260 | 117 | 58.9 | Plus |
BO33713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 14:09:18 Download gff for
BO33713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RA | 101..2980 | 17..2898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:21 Download gff for
BO33713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RA | 116..2995 | 17..2898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:50 Download gff for
BO33713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scaf6-RA | 116..2995 | 17..2898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:50 Download gff for
BO33713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17036933..17037030 | 2801..2898 | 97 | <- | Minus |
| 3L | 17037084..17037255 | 2629..2800 | 100 | <- | Minus |
| 3L | 17037320..17037634 | 2314..2628 | 100 | <- | Minus |
| 3L | 17037706..17037873 | 2146..2313 | 100 | <- | Minus |
| 3L | 17037931..17038932 | 1144..2145 | 100 | <- | Minus |
| 3L | 17038995..17039193 | 945..1143 | 100 | <- | Minus |
| 3L | 17039257..17039333 | 868..944 | 100 | <- | Minus |
| 3L | 17039556..17039630 | 793..867 | 100 | <- | Minus |
| 3L | 17040138..17040210 | 720..792 | 100 | <- | Minus |
| 3L | 17040439..17040601 | 557..719 | 100 | <- | Minus |
| 3L | 17041694..17042040 | 210..556 | 100 | <- | Minus |
| 3L | 17042103..17042273 | 39..209 | 100 | <- | Minus |
| 3L | 17042438..17042459 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:21 Download gff for
BO33713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17030033..17030130 | 2801..2898 | 97 | <- | Minus |
| arm_3L | 17030184..17030355 | 2629..2800 | 100 | <- | Minus |
| arm_3L | 17030420..17030734 | 2314..2628 | 100 | <- | Minus |
| arm_3L | 17030806..17030973 | 2146..2313 | 100 | <- | Minus |
| arm_3L | 17031031..17032032 | 1144..2145 | 100 | <- | Minus |
| arm_3L | 17032095..17032293 | 945..1143 | 100 | <- | Minus |
| arm_3L | 17032357..17032433 | 868..944 | 100 | <- | Minus |
| arm_3L | 17032656..17032730 | 793..867 | 100 | <- | Minus |
| arm_3L | 17033238..17033310 | 720..792 | 100 | <- | Minus |
| arm_3L | 17033539..17033701 | 557..719 | 100 | <- | Minus |
| arm_3L | 17034794..17035140 | 210..556 | 100 | <- | Minus |
| arm_3L | 17035203..17035373 | 39..209 | 100 | <- | Minus |
| arm_3L | 17035538..17035559 | 17..38 | 100 | | Minus |
BO33713.pep Sequence
Translation from 16 to 2914
> BO33713.pep
MDVQPPRDASLRNIIDKLAEFVARNGPEFEAITKQKQQNNPKFEFLYGGE
FANYYQFRVAAEQALLKQQAINQQLPPGAPSGHYMQHPPPMQQSQPPGLY
PPPNQQPPHPPETAQDNMQQQTQHSWPPNSGNGGPPNNQQANGNPMAMNL
TSQLEAIKMQQKSLREQIQQSEANLSAQHTALMNQKTKQIEDAIAAAQTA
QQEQMAGEQGIVLRDFDGVLQPIIESCTKDSISAGKNWILQHSTDSAKIN
VVLQYLLKKALVNGSTFQQKLHLIYLVNDILHHCMRKNINDLKNSLENVV
IPMFCSADLIGNPDQRQKLAKLLSLWESKAKFFDACVISKLQSPDSSMQE
YKTNLQNTHHDITAKFTQNTKATLDNYQKQHHVFIQHASQQIVQLEKQAQ
HLEQQIVAQKSQQQHMLQHQQKNIPSLMSHRIAMPGDHEHMNSQGPHDQQ
HPQAGNNMYPGGNFQQQQPPPGNHFADPRGPNFFIPDMSKPPPGFPGPMH
HNQGPAMGQQQPQPGQFPPMQAPGSGNEPPVDLGVLSAAIQACLQMQQQH
HPDDPQQQGQHQLQQQQQQQPQQQKQPPPMAAYPQNIVRPGQQNADSSEV
DLDVLNAAIRAVITNKPEDGTLEDGQQPQKLVDGESGEPVVIGEPQIPTA
PYYDLPAGLMVPLIRLEDYNYKALDPADIRLPAPAPQSERLTNALNAFYS
APSHDRPRDNEGWEKLGLYEYYKVKNAARKQKEEEIKDGIREKSRSPSPI
VLEKPLPKKSNKRVYRSKSRSRSRSKTPPHRDRSLSRSRSRSRSMERSLT
PPPMNRSRLGGGNNRKGRNRSPRHERDNNSGSTNTREGRGDRGNSNSRDN
GNSTNLRRVDRDRSLTPPSFLGSTFAKPADFIEESNKGHQMLMKMGWAGT
GTGLGSKNQGIDTPISGGEVRDRREMYKGVGANMHDPFESFRKNKGAAFA
HRMRSRDDKSASFLDH
BO33713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scaf6-PA | 960 | CG33522-PA | 1..960 | 1..960 | 5103 | 100 | Plus |
| scaf6-PE | 251 | CG33522-PE | 1..235 | 1..235 | 1239 | 100 | Plus |
| scaf6-PC | 182 | CG33522-PC | 1..182 | 1..182 | 972 | 98.9 | Plus |
| ptip-PA | 2294 | CG32133-PA | 365..872 | 64..595 | 210 | 23.8 | Plus |
| ptip-PA | 2294 | CG32133-PA | 802..1345 | 59..585 | 201 | 21.8 | Plus |
| kto-PA | 2531 | CG8491-PA | 1962..2214 | 390..639 | 187 | 29.1 | Plus |
