BO33714.complete Sequence
3028 bp assembled on 2013-04-18
GenBank Submission: KX799464
> BO33714.complete
GAAGTTATCAGTCGACATGTCGTACCCGCCGCGGGCGCCCATGCCGCCCT
TCATGAATACAGCCATACCGCCGCCGCACATAATGCAGAACATGGCCAAG
CCGCCGAGGAGCTTCCGTAACTCGGCCACCATTAGTTCACAGCCGACAGT
ATACCAACGTCCGCCGGAGCCGCAACCACAGTTCCGCGGACCCATCATTA
CCGTCTTCGTGGGCAACATCAGCGAACGCGTCCCGGAGGCACTGCTCAAA
CGCATCCTGAACGCTTGCGGCGTGGTAATCAATTGGAAACGGGTGTCCAC
ATTCGGCTTCTGCGAATTTGACGGACCTATTGCGGCAATGCGAGCCGTTC
GCCTGCTCAGCGAGATGGAAATCGATGGCAAGAAGCTGGTAGCCAAGGTA
GATGCCAAGAACAAGGTTCTCATCGAGGATTACAAGGAGCAGGAGTGCAA
GAACGGCGATCGTTCCAACCCAGTGGACGAAAAGACCGAGGACGAGTTCG
CCATTGCCCAGATGCACGAATTCCTGGAAGAGCACAAGCACGAGTTCGAA
GGATTCGATAGCAGCAGTCGCGCCGATTTGTACGGCAGCGCCAATCGCAA
TAAGAAGACACGCCGCGAGGAAGACATAAAGATGAAGGTGCTAAGCGAAA
ATACCCTGGAGGAAGAAAAGCGCAACTTGATTAGCAGCGAGATAGGCAAA
TTCCGTATGCGTGCGGAGGAAGACGAGCACCGCAAAGAGCTGGAGAAGGA
GAAGGAAAAGGAGAAGCTTGCGGCCAGCAAGGAGAAGGAGCGCAAAAAGC
AGCGCGAAATGGAGCGAATGTCGTCGACCAGCAAGTCTGGCAGCTCATCG
ACAGCGGCCGCCAGTTCCTCCAGCGCTACAGCCACCTCTTCGACACCCGC
CGCCGATGGGGCTGACATGTCGGATAAGACAGACAAGGAATCAGTCGCTG
TTGTGATCAAGGAAACAGTTAAGGAGTCAAAGGAATCTGCCTCCTCCACC
GGACGCAAGGAGTCGTCGTCGGCTGCCATCGAGATAACACAGAAGGAGCG
CCGCTCTGACTCAAAGGAGACACGTCGCCGCCGCTCCAAATCCCGCTCCA
AGGATCGCGAACGGGAACGTGAGCGTGAGCTGCGCGAGCTTCGCGACAAG
GAGCGCGAACGTGAAAGGGATCGGGAGCGTGAGCGCGAGCGGGAACGCAA
CGAAATGCGCGAACGGGAGCGCAACGAGATGCGCGAACGGGAACGCGAAA
GGGAGCGTGAACGGGAGCGCGAGGAGAAGCTGCTGAAGCCAGTCCGGGAC
ACGTGGCGTGAAAAGGAAATGGAGGACGAACTGCGCGACCGCAAGAAAGC
CGAGAAGAAGGCGCGCGAAAAGGAGATCGCCTACCAGACGCGCCTAACCG
ACTGGGAGGTTCGCGAGAAGCGCAAGGCTAAGGAGAACGAGAAGTACCGC
CTGAAGGAGTTGCTGCGCCAGGAGGAGCGCGAGACCGACGCCAAGCGACT
GAAGGAGTTCGTCGAAGATTACGACGATGAGCGCGACGATTCTCTGTATT
ATCGCGGCCGCGAGCTGCAGCAGCGACTGGCGGAACGAGTGCGCGAGGCG
GATGCCGATTCCAAGGATCGCGAGAAGGAGGCCGAAGAGTTGGCCGAACT
CAAGTCCAAATTCTTTAGCGGGGAATACGAGAATCCGTCGCTGGAGTTCG
AAAAGGCGCGTCTCGAGATCGAGAAGCTCTACGAGCCGCGCATCCTGATC
AATGTGAACCAAGAGCCTCCGGCAGCGGCGACATCATCGGTCCACCAGCG
CAAGCAGGCCGCCTCGGCGCCGGGCGAAGACGACGAGGGGCAGAAGCAGC
GACAGAAGAGCCAGCAGCTGGACAGCTACGACCCAGACATGGCCGGTACG
AATGATGATGACTCCATATCGAACGACGACCGTGCATCCATGGCCGACAC
AGCCTCCAATGCCAGTGGTGTCTATGCCAAGAACAACAACAACGACCAGT
CGCTGTCGAATAGCTTGAGCAGGCATAACAGTGAGTCGCGCGATTCGCTG
GCCCAGATCCATACTCCCACGCAGAGCGCGATCCTTAATGACCAAGAATC
GGGTCACGATGCCATACTGCCATCGGCCACGCCGCCCATGACCATGCCCC
TTATCTCGCTGACGCTGGGCAATAACCTCAAGAAGAAGAAGATAGAGGCC
ACAGGCGTGTTCGTCAACGACGACGACAACGATGAGAACATCAATCCCAA
GAAGCGCAAACTTGTGCCGCTAGACTACGATGATAACATAAGCAACACCA
CGCCATCCAATCATGCAGCCAGCAGCGGCAGCGGAGCTGCGAACAACAGC
AGCAGCAGCAACAACAATAACAGCAGCTCGGCGGATCGCCAAAGCTCCGC
CGTGTCGGCGGCAACCGCTGCAGCCGCTGCCGTTAGCCAGAAGATCGCCC
AGGCTTTCGGTGGCGGCTCATCGGGGTCGGGTTCGGGATCCGGCTCCGGT
TCGAACGCATCAGGCGGCAAGAACAACGGCGGCGGCAGCAGCAGCAGCAG
CAACAACAAACATAACAGCAACAGCAAACATGGTAAGAATGAGGCAGCTG
CATCTGCTGGCAGTAGCGCAGATGCTGCCGCTGCGAACATCAAAAAGGAT
GAGAATGGTGCAAAGGTGTATGATGAAAAACGGCGGCATATAAAAAGCAT
TATTGACAGGATACCCACGCAAAAGGAGGAGCTATTTAATTATAAGCTAG
ACCGCAACGAGATTGACAGCGGTCTAATGGAACGCAAAATACGTCCATGG
ATAAATAAGAAAATCATCGAGTATATCGGTGAGCCGGAGCCGACGCTAGT
GGACTTTATATGTTCCAAAGTGTTGGCCGGCAGCCCGCCTCAAAGCATCT
TGGATGATGTGCAAATGGTACTCGACGAGGAAGCCGAGGTCTTTGTGGTG
AAGATGTGGCGTCTGCTCATTTACGAACTGGACGCCAAGAAGAGCGGCCT
TGCGGGGAAGGCAAGCTTTCTAGACCAT
BO33714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4119-RB | 2997 | CG4119-PB | 1..2994 | 17..3010 | 14970 | 100 | Plus |
| CG4119-RA | 2997 | CG4119-PA | 1..2994 | 17..3010 | 14970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4119-RB | 3857 | CG4119-RB | 355..3348 | 17..3010 | 14970 | 100 | Plus |
| CG4119-RA | 3697 | CG4119-RA | 292..3285 | 17..3010 | 14970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5667210..5668332 | 322..1444 | 5615 | 100 | Plus |
| X | 23542271 | X | 5668396..5669226 | 1443..2273 | 4155 | 100 | Plus |
| X | 23542271 | X | 5669300..5669947 | 2272..2919 | 3240 | 100 | Plus |
| X | 23542271 | X | 5666557..5666798 | 80..321 | 1210 | 100 | Plus |
| X | 23542271 | X | 5670050..5670143 | 2917..3010 | 470 | 100 | Plus |
| X | 23542271 | X | 5666406..5666472 | 17..83 | 320 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 13:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 636..685 | 718..766 | 121 | 74 | Plus |
BO33714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-04-19 15:03:08 Download gff for
BO33714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4119-RA | 313..3306 | 17..3012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:35 Download gff for
BO33714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4119-RA | 292..3285 | 17..3012 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:25:22 Download gff for
BO33714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4119-RA | 292..3285 | 17..3012 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:25:22 Download gff for
BO33714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5666406..5666468 | 17..79 | 100 | -> | Plus |
| X | 5666557..5666798 | 80..321 | 100 | -> | Plus |
| X | 5667210..5668332 | 322..1444 | 100 | -> | Plus |
| X | 5668398..5669226 | 1445..2273 | 100 | -> | Plus |
| X | 5669302..5669945 | 2274..2917 | 100 | -> | Plus |
| X | 5670051..5670143 | 2918..3012 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:35 Download gff for
BO33714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5560439..5560501 | 17..79 | 100 | -> | Plus |
| arm_X | 5560590..5560831 | 80..321 | 100 | -> | Plus |
| arm_X | 5561243..5562365 | 322..1444 | 100 | -> | Plus |
| arm_X | 5562431..5563259 | 1445..2273 | 100 | -> | Plus |
| arm_X | 5563335..5563978 | 2274..2917 | 100 | -> | Plus |
| arm_X | 5564084..5564176 | 2918..3012 | 97 | | Plus |
BO33714.pep Sequence
Translation from 16 to 3028
> BO33714.pep
MSYPPRAPMPPFMNTAIPPPHIMQNMAKPPRSFRNSATISSQPTVYQRPP
EPQPQFRGPIITVFVGNISERVPEALLKRILNACGVVINWKRVSTFGFCE
FDGPIAAMRAVRLLSEMEIDGKKLVAKVDAKNKVLIEDYKEQECKNGDRS
NPVDEKTEDEFAIAQMHEFLEEHKHEFEGFDSSSRADLYGSANRNKKTRR
EEDIKMKVLSENTLEEEKRNLISSEIGKFRMRAEEDEHRKELEKEKEKEK
LAASKEKERKKQREMERMSSTSKSGSSSTAAASSSSATATSSTPAADGAD
MSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAIEITQKERRSDSK
ETRRRRSKSRSKDRERERERELRELRDKERERERDRERERERERNEMRER
ERNEMREREREREREREREEKLLKPVRDTWREKEMEDELRDRKKAEKKAR
EKEIAYQTRLTDWEVREKRKAKENEKYRLKELLRQEERETDAKRLKEFVE
DYDDERDDSLYYRGRELQQRLAERVREADADSKDREKEAEELAELKSKFF
SGEYENPSLEFEKARLEIEKLYEPRILINVNQEPPAAATSSVHQRKQAAS
APGEDDEGQKQRQKSQQLDSYDPDMAGTNDDDSISNDDRASMADTASNAS
GVYAKNNNNDQSLSNSLSRHNSESRDSLAQIHTPTQSAILNDQESGHDAI
LPSATPPMTMPLISLTLGNNLKKKKIEATGVFVNDDDNDENINPKKRKLV
PLDYDDNISNTTPSNHAASSGSGAANNSSSSNNNNSSSADRQSSAVSAAT
AAAAAVSQKIAQAFGGGSSGSGSGSGSGSNASGGKNNGGGSSSSSNNKHN
SNSKHGKNEAAASAGSSADAAAANIKKDENGAKVYDEKRRHIKSIIDRIP
TQKEELFNYKLDRNEIDSGLMERKIRPWINKKIIEYIGEPEPTLVDFICS
KVLAGSPPQSILDDVQMVLDEEAEVFVVKMWRLLIYELDAKKSGLAGKAS
FLDH
BO33714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4119-PB | 998 | CG4119-PB | 1..998 | 1..998 | 5046 | 100 | Plus |
| CG4119-PA | 998 | CG4119-PA | 1..998 | 1..998 | 5046 | 100 | Plus |
| CG2839-PA | 826 | CG2839-PA | 309..798 | 140..622 | 389 | 25.2 | Plus |
| CG2839-PA | 826 | CG2839-PA | 291..728 | 140..617 | 361 | 26.8 | Plus |
| CG2839-PA | 826 | CG2839-PA | 367..748 | 127..544 | 359 | 25.7 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 203..1050 | 116..890 | 321 | 19.6 | Plus |
| CG7971-PA | 1062 | CG7971-PA | 203..1050 | 116..890 | 321 | 19.6 | Plus |
| CG2839-PA | 826 | CG2839-PA | 287..491 | 339..541 | 288 | 35.1 | Plus |
| CG2839-PA | 826 | CG2839-PA | 280..509 | 315..541 | 285 | 29.9 | Plus |
| CG2839-PA | 826 | CG2839-PA | 283..548 | 312..573 | 278 | 27.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 264..544 | 325..617 | 276 | 27.7 | Plus |
| CG2839-PA | 826 | CG2839-PA | 263..526 | 339..616 | 267 | 27.3 | Plus |
| CG2839-PA | 826 | CG2839-PA | 515..813 | 137..466 | 210 | 23.3 | Plus |
| CG7971-PG | 1062 | CG7971-PG | 34..749 | 176..791 | 203 | 19 | Plus |
