BO33715.complete Sequence
832 bp assembled on 2013-05-23
GenBank Submission: KX794867
> BO33715.complete
GAAGTTATCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACA
TCATTAAGTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGA
CCAGGTGGCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGC
CCGCCGCGGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCG
TGCTCAAGGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCC
AAGTTCCCACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGA
CGGACCGAAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCA
TCGTCGGTAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTC
TTCAACGACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTC
CGGTCGCTCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACG
CCTTGAAGGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCT
ATGACCATTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGT
AGCCGCCACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCAT
TCAAGCGTGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAA
CGTCCGGTCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAA
GGCCCCGCCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCA
ACGACATGAAGATCGCAAGCTTTCTAGACCAT
BO33715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ref1-RA | 801 | CG1101-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ref1-RA | 1328 | CG1101-RA | 179..976 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7079963..7080209 | 263..17 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 7079253..7079456 | 465..262 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 7078819..7079020 | 665..464 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 7078256..7078408 | 814..662 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:43:58 has no hits.
BO33715.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-05-23 10:50:14 Download gff for
BO33715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aly-RA | 196..993 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:13:25 Download gff for
BO33715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref1-RA | 179..976 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:33:47 Download gff for
BO33715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref1-RA | 179..976 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:33:47 Download gff for
BO33715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7078254..7078407 | 663..816 | 98 | <- | Minus |
| 3R | 7078822..7079019 | 465..662 | 100 | <- | Minus |
| 3R | 7079254..7079455 | 263..464 | 100 | <- | Minus |
| 3R | 7079964..7080209 | 17..262 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:13:25 Download gff for
BO33715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2903976..2904129 | 663..816 | 98 | <- | Minus |
| arm_3R | 2904544..2904741 | 465..662 | 100 | <- | Minus |
| arm_3R | 2904976..2905177 | 263..464 | 100 | <- | Minus |
| arm_3R | 2905686..2905931 | 17..262 | 100 | | Minus |
BO33715.pep Sequence
Translation from 16 to 832
> BO33715.pep
MVDKIEMSLDDIIKSTRSQKKPQAARGGPGGARKTGGQQRFAGGARRGGA
NAGGSPRKPGSVLKGPRGGVAAGAVQKAKFPRGDVNSAWKHDMYDGPKRG
AVGGGSGPTRLIVGNLDYGVSNTDIKELFNDFGPIKKAAVHYDRSGRSLG
TADVIFERRADALKAIKQYHGVPLDGRPMTIQLAVSDVAVLTRPVAATDV
KRRVGGTAPTSFKRGGGQAGGTARRGFKRPVGGKPAAGGQRRERKAPPTA
EELDAELDSYINDMKIASFLDH
BO33715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ref1-PA | 266 | CG1101-PA | 1..266 | 1..266 | 1378 | 100 | Plus |
| Ref2-PC | 220 | CG17031-PC | 1..192 | 1..229 | 253 | 34.8 | Plus |
| Ref2-PB | 220 | CG17031-PB | 1..192 | 1..229 | 253 | 34.8 | Plus |
| Ref2-PA | 220 | CG17031-PA | 1..192 | 1..229 | 253 | 34.8 | Plus |
