BO33717.complete Sequence
934 bp assembled on 2012-12-20
GenBank Submission: KX796374
> BO33717.complete
GAAGTTATCAGTCGACATGTCTAACGACAAGCGCACCATTTATGTGGGCG
GCCTGGCTGACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCC
TTTGGGGATATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCG
ACACCGCGGATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTG
CTGCCATTGATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGC
GTGAACTTGGCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTAT
CTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGC
CGGAAGGCGAACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCG
GCAGTCATCGAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACAT
ACGGATTGGTGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAG
ATGTGGTGCCGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAG
CAGGGCTACGGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTT
TATGTGTCAAGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGT
CCATCTATGGCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAAC
AGTTTTGGAACTCTTTCAATGGCCAACTCGGGCGCCAACACAAATGGCTC
GCAGTTTTTTATATGTACCACAAAAACAGATTGGCTGGACAACAAGCACG
TCGTTTTTGGCCATGTCATCAGTGGCGCCGAGGTGGTGCGCAAGATGGAA
CGTTGTGGCTCCAAGTCGGGCACTCCCAGCCAAAAGATTGTCATATACTC
CTGTGGAGAACTCAAAGCAAGCTTTCTAGACCAT
BO33717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyp33-RA | 903 | CG4886-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
| Cyp1-RA | 684 | CG9916-PA | 268..579 | 500..811 | 555 | 78.5 | Plus |
| CG7768-RB | 495 | CG7768-PB | 79..390 | 500..811 | 270 | 72.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyp33-RA | 986 | CG4886-RA | 67..967 | 16..916 | 4505 | 100 | Plus |
| Cyp1-RA | 1227 | CG9916-RA | 302..613 | 500..811 | 555 | 78.5 | Plus |
| CG7768-RB | 679 | CG7768-RB | 166..477 | 500..811 | 270 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17545553..17545937 | 217..601 | 1925 | 100 | Plus |
| 2R | 25286936 | 2R | 17545288..17545489 | 16..217 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 17545994..17546166 | 602..774 | 865 | 100 | Plus |
| 2R | 25286936 | 2R | 17546240..17546381 | 775..916 | 710 | 100 | Plus |
| X | 23542271 | X | 16318287..16318598 | 811..500 | 555 | 78.5 | Minus |
| 3L | 28110227 | 3L | 14218461..14218772 | 500..811 | 270 | 72.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:02:56 has no hits.
BO33717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:33 Download gff for
BO33717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyp33-RA | 398..1297 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:13 Download gff for
BO33717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyp33-RA | 68..967 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:07 Download gff for
BO33717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cyp33-RA | 68..967 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:07 Download gff for
BO33717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17545289..17545489 | 17..217 | 100 | -> | Plus |
| 2R | 17545554..17545937 | 218..601 | 100 | -> | Plus |
| 2R | 17545994..17546166 | 602..774 | 100 | -> | Plus |
| 2R | 17546240..17546381 | 775..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:13 Download gff for
BO33717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13432794..13432994 | 17..217 | 100 | -> | Plus |
| arm_2R | 13433059..13433442 | 218..601 | 100 | -> | Plus |
| arm_2R | 13433499..13433671 | 602..774 | 100 | -> | Plus |
| arm_2R | 13433745..13433886 | 775..918 | 98 | | Plus |
BO33717.pep Sequence
Translation from 16 to 934
> BO33717.pep
MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFA
FIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPIWADDD
WLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNPQVFFDIRIGGN
DAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGG
DFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFIC
TTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGELK
ASFLDH
BO33717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cyp33-PA | 300 | CG4886-PA | 1..300 | 1..300 | 1600 | 100 | Plus |
| CG7768-PB | 164 | CG7768-PB | 4..164 | 139..299 | 625 | 70.8 | Plus |
| CG7768-PA | 164 | CG7768-PA | 4..164 | 139..299 | 625 | 70.8 | Plus |
| Cyp1-PA | 227 | CG9916-PA | 59..227 | 133..299 | 611 | 68.6 | Plus |
| CG2852-PD | 205 | CG2852-PD | 18..193 | 121..302 | 484 | 54.1 | Plus |
