BO33719.complete Sequence
1090 bp assembled on 2013-01-15
GenBank Submission: KX795954
> BO33719.complete
GAAGTTATCAGTCGACATGGCTGATGCCGCGGAGAGTAAGCCACTGGCCG
CCGAACAGCAGCAGGCGCAGCAGCAGCCGGAGCAGCAGCAGAATCCGCCG
AATCCGCAGGAGCAGGATCACGAGCAGGAGCCGCTGGACGAGCTGCAGGG
ACAGCAGGGCCAGCCCGCTCCGCCCACCAAGGAAGTCATCGCCACCAAAG
TCACCGGCACCGTCAAGTGGTTCAACGTGAAGAGCGGCTACGGCTTCATC
AACCGCAACGACACCAGAGAGGATGTCTTTGTGCACCAGAGCGCCATTGC
GCGGAACAACCCCAAAAAGGCGGTCCGCTCGGTGGGCGACGGTGAGGTCG
TTGAGTTCGACGTGGTCATTGGTGAGAAGGGCAACGAGGCGGCCAACGTG
ACCGGTCCCTCCGGTGAGCCGGTGCGGGGCAGTCAGTTTGCAGCGGACAA
GCGCCGTAACTTCCGTCCCTGGATGAAGAAGAATCGCCGCAAGGATGGCG
AAGTGGAAGGCGAAGACGCCGAATCGTCGGCCCAGCAGCAACAGCAGCAG
GCGGCACCAATCGTTGACGGGCAGCCGCAGCAGCAGGTGCAGTCCGGCCC
GCGTCAACCACGACAGAACTTCCGCCGAGGACCACCCGGTGGACCGCCCG
GAGGACCTCGAGGTGGCCCCCGAGGACCGCCTGGTGGAGCTCCCGGTGGC
CCCCGGCGCTACAACAACTATTATCTGCGTCAGCCGAGACGCGGCCTGGG
CGGCGGTGACGGCAGCGCCGAGCCCGGTGTCCACGATCAGAATCCCGAGG
GTCTGCAGCGCGGCGAGGGTCAGGGACCACGTCGCGGTGGAGGCCCACCG
GGCGGACCCCAGAGGCGCTTCTTCCGACGCAACTTCAACAATGGTCCACC
GCCACCACGCCGCGACGGCGGAGAATACATTCAAGGCCAGGGACCGCCAC
GCCCACAACAGCCACGTCCACGTCGCCAGAGGAAACCAAATGGCCCTGGC
GGTGGTTCGGAGCAGCAGCCAGAGAAGAACGGCGCTCAAGAGCTGCAAAA
TACAACCACAGAGAGCACTGCAGCAAGCTTTCTAGACCAT
BO33719.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yps-RA | 1059 | CG5654-PA | 1..1056 | 17..1072 | 5280 | 100 | Plus |
| yps-RB | 1023 | CG5654-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yps-RA | 1750 | CG5654-RA | 265..1320 | 17..1072 | 5280 | 100 | Plus |
| yps-RB | 2677 | CG5654-RB | 265..1275 | 17..1027 | 5055 | 100 | Plus |
| yps-RB | 2677 | CG5654-RB | 1795..1841 | 1026..1072 | 235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:09:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12122837..12123575 | 929..191 | 3695 | 100 | Minus |
| 3L | 28110227 | 3L | 12124712..12124886 | 191..17 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 12122676..12122773 | 1027..930 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 12122110..12122156 | 1072..1026 | 235 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2761..2966 | 57..267 | 225 | 58 | Plus |
BO33719.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-15 17:08:47 Download gff for
BO33719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yps-RA | 220..1275 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:23 Download gff for
BO33719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yps-RA | 265..1320 | 17..1074 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:22:17 Download gff for
BO33719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yps-RA | 265..1320 | 17..1074 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:22:17 Download gff for
BO33719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12122108..12122154 | 1028..1074 | 95 | <- | Minus |
| 3L | 12122676..12122773 | 930..1027 | 100 | <- | Minus |
| 3L | 12122837..12123574 | 192..929 | 100 | <- | Minus |
| 3L | 12124712..12124886 | 17..191 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:23 Download gff for
BO33719.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12115208..12115254 | 1028..1074 | 95 | <- | Minus |
| arm_3L | 12115776..12115873 | 930..1027 | 100 | <- | Minus |
| arm_3L | 12115937..12116674 | 192..929 | 100 | <- | Minus |
| arm_3L | 12117812..12117986 | 17..191 | 100 | | Minus |
BO33719.pep Sequence
Translation from 16 to 1090
> BO33719.pep
MADAAESKPLAAEQQQAQQQPEQQQNPPNPQEQDHEQEPLDELQGQQGQP
APPTKEVIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPK
KAVRSVGDGEVVEFDVVIGEKGNEAANVTGPSGEPVRGSQFAADKRRNFR
PWMKKNRRKDGEVEGEDAESSAQQQQQQAAPIVDGQPQQQVQSGPRQPRQ
NFRRGPPGGPPGGPRGGPRGPPGGAPGGPRRYNNYYLRQPRRGLGGGDGS
AEPGVHDQNPEGLQRGEGQGPRRGGGPPGGPQRRFFRRNFNNGPPPPRRD
GGEYIQGQGPPRPQQPRPRRQRKPNGPGGGSEQQPEKNGAQELQNTTTES
TAASFLDH
BO33719.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yps-PA | 352 | CG5654-PA | 1..352 | 1..352 | 1915 | 100 | Plus |
| yps-PB | 340 | CG5654-PB | 1..337 | 1..337 | 1841 | 100 | Plus |
| AGO2-PB | 1214 | CG7439-PB | 15..321 | 2..335 | 178 | 24 | Plus |
| AGO2-PC | 1217 | CG7439-PC | 18..324 | 2..335 | 178 | 24 | Plus |
| CG10555-PB | 926 | CG10555-PB | 291..594 | 14..327 | 164 | 26.1 | Plus |
