Clone BO33721 Report

Search the DGRC for BO33721

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:337
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptshep-RA
Protein status:BO33721.pep: Imported from assembly
Sequenced Size:1768

Clone Sequence Records

BO33721.complete Sequence

1768 bp assembled on 2013-01-23

GenBank Submission: KX799528

> BO33721.complete
GAAGTTATCAGTCGACATGCACCCACGATACAGCCCAGCCCCGCCCCCTC
AGCAACAGCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGCGGCGGG
GGAGGTGGAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCAATTGCC
GCCGCAGATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGTCTAGCG
CCGCCGCCGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCCCCGCTC
ACCGCCTCAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCCACCGGC
CATGACAAGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCGCCGGTG
CACCTTATCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCCCCGGCC
GCTGCCGCAGCCGCCGCTGCTGTTGCCCAGCAGGCAGCCTACCGCTATAC
GGCGCCGCTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACACGGCCA
CGACACCGGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCAGCCTCA
CCGAGCAACACCAACTCGAGCAGCTCCTCGAACACTGGCTCCCAGAGCGG
CACCCTGAGCACCAGCCTGAGCAACACGACGAACACCAACACGAACATGG
GTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGCGGCGAGCAGTTG
TCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGGCACAACCGACAA
GGATCTAGTTAATATGTGTGCACAATACGGAACAATTATATCAACCAAGG
CTATTTTAGATAAAACAACAAACAAATGTAAAGGTTACGGCTTCGTCGAC
TTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGGATTGCAGGGGAA
GGGCGTGCAAGCTCAGATGGCCAAACAACAGGAACAGGATCCCACAAATT
TGTATATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAGGCA
ATGCTATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGATCA
GCAGATGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCGAGA
AGTGCGAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGTGCC
AAAGATCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAAGAA
TCTCTTCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCTCCG
CGGAGGGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGAGTC
AGCGTGAACGTGGGCACACCCATCGGAGTGCCCTACTCCCGCTTCAGCGC
CCCCCAGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGGGTT
ACATGATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTACATG
CAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGC
GGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCGGTGATA
CGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTGCAGATT
GGCAACTCTTATATTAGTCCAACTTATCCATATTATGCACCACCACCAAC
TATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCACAGCTG
CATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCTCCCAAA
GCAAGCTTTCTAGACCAT

BO33721.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:30
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RA 1737 CG32423-PA 1..1734 17..1750 8670 100 Plus
shep-RF 1773 CG32423-PF 540..1770 520..1750 6155 100 Plus
shep-RE 1140 CG32423-PE 306..1137 919..1750 4130 99.8 Plus
shep-RF 1773 CG32423-PF 1..504 17..520 2520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
shep-RA 3036 CG32423-RA 373..2106 17..1750 8670 100 Plus
shep-RF 5850 CG32423-RF 912..2142 520..1750 6155 100 Plus
shep-RE 2776 CG32423-RE 1015..1846 919..1750 4130 99.8 Plus
shep-RF 5850 CG32423-RF 373..876 17..520 2520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5163345..5163704 1426..1067 1800 100 Minus
3L 28110227 3L 5218950..5219285 520..185 1680 100 Minus
3L 28110227 3L 5170187..5170441 774..520 1275 100 Minus
3L 28110227 3L 5162967..5163151 1609..1425 925 100 Minus
3L 28110227 3L 5276154..5276322 185..17 845 100 Minus
3L 28110227 3L 5163833..5163975 1068..926 715 100 Minus
3L 28110227 3L 5162470..5162610 1750..1610 705 100 Minus
3L 28110227 3L 5166968..5167061 925..832 470 100 Minus
3L 28110227 3L 5168242..5168302 835..775 305 100 Minus
Blast to na_te.dros performed 2014-11-28 13:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2387..2533 494..647 141 60.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 113..198 5..93 121 64 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9143..9228 5..93 121 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2417 41..91 120 70.6 Plus

BO33721.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-23 09:16:06 Download gff for BO33721.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2106 17..1752 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:14 Download gff for BO33721.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2106 17..1752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:45 Download gff for BO33721.complete
Subject Subject Range Query Range Percent Splice Strand
shep-RA 373..2106 17..1752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:45 Download gff for BO33721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5162468..5162610 1610..1752 98 <- Minus
3L 5162967..5163149 1427..1609 100 <- Minus
3L 5163345..5163703 1068..1426 100 <- Minus
3L 5163834..5163975 926..1067 100 <- Minus
3L 5166968..5167059 834..925 100 <- Minus
3L 5168244..5168302 775..833 100 <- Minus
3L 5170187..5170440 521..774 100 <- Minus
3L 5218950..5219285 185..520 100 <- Minus
3L 5276155..5276322 17..184 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:14 Download gff for BO33721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5212050..5212385 185..520 100 <- Minus
arm_3L 5269255..5269422 17..184 100   Minus
arm_3L 5155568..5155710 1610..1752 98 <- Minus
arm_3L 5156067..5156249 1427..1609 100 <- Minus
arm_3L 5156445..5156803 1068..1426 100 <- Minus
arm_3L 5156934..5157075 926..1067 100 <- Minus
arm_3L 5160068..5160159 834..925 100 <- Minus
arm_3L 5161344..5161402 775..833 100 <- Minus
arm_3L 5163287..5163540 521..774 100 <- Minus

BO33721.pep Sequence

Translation from 16 to 1768

> BO33721.pep
MHPRYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPR
SQNYSNGSSSSAAAAPLTSRSAFPGAPLTASAVALKGALPQRPPAMTSPA
AAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ
PAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS
LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNM
CAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQ
MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK
GVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP
DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGG
YPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ
PRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTM
PMTDSEQASTAASPDEAYTQYPHQAAPKASFLDH

BO33721.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
shep-PA 578 CG32423-PA 1..578 1..578 3033 100 Plus
shep-PF 590 CG32423-PF 1..590 1..578 3010 98 Plus
shep-PB 499 CG32423-PB 1..499 96..578 2466 96 Plus
shep-PD 499 CG32423-PD 1..499 96..578 2466 96 Plus
shep-PE 379 CG32423-PE 1..379 211..578 1926 97.1 Plus