BO33721.complete Sequence
1768 bp assembled on 2013-01-23
GenBank Submission: KX799528
> BO33721.complete
GAAGTTATCAGTCGACATGCACCCACGATACAGCCCAGCCCCGCCCCCTC
AGCAACAGCAACAGATGGGCGGACCGCCACACCAGCAGCAGGGCGGCGGG
GGAGGTGGAGGCGTTAGCATGAGGGGGCCATCGAATGCCCAGCAATTGCC
GCCGCAGATTCCGAGATCCCAGAACTATTCAAACGGGAGCTCGTCTAGCG
CCGCCGCCGCACCTCTAACATCGCGCAGCGCCTTCCCCGGCGCCCCGCTC
ACCGCCTCAGCCGTCGCACTCAAGGGCGCTCTACCCCAGCGGCCACCGGC
CATGACAAGTCCCGCAGCCGCTGCCGCTGGCGCCGCCCTGGCCGCCGGTG
CACCTTATCGCGGTGCCGCCAGCTGGACCCCGCAGGGTTATGCCCCGGCC
GCTGCCGCAGCCGCCGCTGCTGTTGCCCAGCAGGCAGCCTACCGCTATAC
GGCGCCGCTGCCCCAGCCGGCGTATGCCGCCTATACGCCGCACACGGCCA
CGACACCGGCCACAACCACGTACGGTCAGCGAGTGCCGACGGCAGCCTCA
CCGAGCAACACCAACTCGAGCAGCTCCTCGAACACTGGCTCCCAGAGCGG
CACCCTGAGCACCAGCCTGAGCAACACGACGAACACCAACACGAACATGG
GTCCCAACGGCACGGTACAGAATCAGAACCAACAGGGCGGCGAGCAGTTG
TCCAAGACAAATCTCTACATTCGCGGTCTGCAGCAGGGCACAACCGACAA
GGATCTAGTTAATATGTGTGCACAATACGGAACAATTATATCAACCAAGG
CTATTTTAGATAAAACAACAAACAAATGTAAAGGTTACGGCTTCGTCGAC
TTCGAGCAGCCAGCCTTCGCCGAGTGCGCCGTAAAAGGATTGCAGGGGAA
GGGCGTGCAAGCTCAGATGGCCAAACAACAGGAACAGGATCCCACAAATT
TGTATATTGCAAATTTGCCGCCCCACTTCAAAGAAACTGATCTGGAGGCA
ATGCTATCGAAATACGGACAAGTTGTTTCGACCAGAATATTGCGTGATCA
GCAGATGAACTCCAAGGGCGTTGGCTTTGCCCGCATGGAGAGTCGCGAGA
AGTGCGAGCAAATCATTCAGATGTTCAATGGTAACACAATACCGGGTGCC
AAAGATCCCCTGCTGGTTAAGTTTGCCGATGGCGGACCGAAAAAGAAGAA
TCTCTTCAAGACGCCCGATCCGAATGCGCGTGCGTGGCGTGACGTCTCCG
CGGAGGGGATTCCCGTGGCCTACGACCCCACAATGCAGCAGAATGGAGTC
AGCGTGAACGTGGGCACACCCATCGGAGTGCCCTACTCCCGCTTCAGCGC
CCCCCAGGTGGGTGGCTATCCAGTGGCCGGCTCCCAATGGATTCCGGGTT
ACATGATGACTCAGGTAGATGATCAGACTTCGTATTCTCCACAGTACATG
CAGATGGCAGCTGCCCCTCCGCTGGGAGTAACCTCATACAAACCGGAGGC
GGTTAACCAGGTGCAGCCCCGTGGCATCTCGATGATGGTTAGCGGTGATA
CGGGCGTGCCATATGGAACAATGATGCCTCAGTTGGCCACCCTGCAGATT
GGCAACTCTTATATTAGTCCAACTTATCCATATTATGCACCACCACCAAC
TATTATACCAACAATGCCAATGACAGATTCCGAACAGGCTAGCACAGCTG
CATCACCCGACGAGGCATACACACAGTATCCACATCAAGCCGCTCCCAAA
GCAAGCTTTCTAGACCAT
BO33721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:13:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shep-RA | 1737 | CG32423-PA | 1..1734 | 17..1750 | 8670 | 100 | Plus |
shep-RF | 1773 | CG32423-PF | 540..1770 | 520..1750 | 6155 | 100 | Plus |
shep-RE | 1140 | CG32423-PE | 306..1137 | 919..1750 | 4130 | 99.8 | Plus |
shep-RF | 1773 | CG32423-PF | 1..504 | 17..520 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shep-RA | 3036 | CG32423-RA | 373..2106 | 17..1750 | 8670 | 100 | Plus |
shep-RF | 5850 | CG32423-RF | 912..2142 | 520..1750 | 6155 | 100 | Plus |
shep-RE | 2776 | CG32423-RE | 1015..1846 | 919..1750 | 4130 | 99.8 | Plus |
shep-RF | 5850 | CG32423-RF | 373..876 | 17..520 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5163345..5163704 | 1426..1067 | 1800 | 100 | Minus |
3L | 28110227 | 3L | 5218950..5219285 | 520..185 | 1680 | 100 | Minus |
3L | 28110227 | 3L | 5170187..5170441 | 774..520 | 1275 | 100 | Minus |
3L | 28110227 | 3L | 5162967..5163151 | 1609..1425 | 925 | 100 | Minus |
3L | 28110227 | 3L | 5276154..5276322 | 185..17 | 845 | 100 | Minus |
3L | 28110227 | 3L | 5163833..5163975 | 1068..926 | 715 | 100 | Minus |
3L | 28110227 | 3L | 5162470..5162610 | 1750..1610 | 705 | 100 | Minus |
3L | 28110227 | 3L | 5166968..5167061 | 925..832 | 470 | 100 | Minus |
3L | 28110227 | 3L | 5168242..5168302 | 835..775 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2387..2533 | 494..647 | 141 | 60.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 113..198 | 5..93 | 121 | 64 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9143..9228 | 5..93 | 121 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2417 | 41..91 | 120 | 70.6 | Plus |
BO33721.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-23 09:16:06 Download gff for
BO33721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RA | 373..2106 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:14 Download gff for
BO33721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RA | 373..2106 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:45 Download gff for
BO33721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
shep-RA | 373..2106 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:45 Download gff for
BO33721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5162468..5162610 | 1610..1752 | 98 | <- | Minus |
3L | 5162967..5163149 | 1427..1609 | 100 | <- | Minus |
3L | 5163345..5163703 | 1068..1426 | 100 | <- | Minus |
3L | 5163834..5163975 | 926..1067 | 100 | <- | Minus |
3L | 5166968..5167059 | 834..925 | 100 | <- | Minus |
3L | 5168244..5168302 | 775..833 | 100 | <- | Minus |
3L | 5170187..5170440 | 521..774 | 100 | <- | Minus |
3L | 5218950..5219285 | 185..520 | 100 | <- | Minus |
3L | 5276155..5276322 | 17..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:14 Download gff for
BO33721.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5212050..5212385 | 185..520 | 100 | <- | Minus |
arm_3L | 5269255..5269422 | 17..184 | 100 | | Minus |
arm_3L | 5155568..5155710 | 1610..1752 | 98 | <- | Minus |
arm_3L | 5156067..5156249 | 1427..1609 | 100 | <- | Minus |
arm_3L | 5156445..5156803 | 1068..1426 | 100 | <- | Minus |
arm_3L | 5156934..5157075 | 926..1067 | 100 | <- | Minus |
arm_3L | 5160068..5160159 | 834..925 | 100 | <- | Minus |
arm_3L | 5161344..5161402 | 775..833 | 100 | <- | Minus |
arm_3L | 5163287..5163540 | 521..774 | 100 | <- | Minus |
BO33721.pep Sequence
Translation from 16 to 1768
> BO33721.pep
MHPRYSPAPPPQQQQQMGGPPHQQQGGGGGGGVSMRGPSNAQQLPPQIPR
SQNYSNGSSSSAAAAPLTSRSAFPGAPLTASAVALKGALPQRPPAMTSPA
AAAAGAALAAGAPYRGAASWTPQGYAPAAAAAAAAVAQQAAYRYTAPLPQ
PAYAAYTPHTATTPATTTYGQRVPTAASPSNTNSSSSSNTGSQSGTLSTS
LSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNM
CAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAFAECAVKGLQGKGVQAQ
MAKQQEQDPTNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSK
GVGFARMESREKCEQIIQMFNGNTIPGAKDPLLVKFADGGPKKKNLFKTP
DPNARAWRDVSAEGIPVAYDPTMQQNGVSVNVGTPIGVPYSRFSAPQVGG
YPVAGSQWIPGYMMTQVDDQTSYSPQYMQMAAAPPLGVTSYKPEAVNQVQ
PRGISMMVSGDTGVPYGTMMPQLATLQIGNSYISPTYPYYAPPPTIIPTM
PMTDSEQASTAASPDEAYTQYPHQAAPKASFLDH
BO33721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
shep-PA | 578 | CG32423-PA | 1..578 | 1..578 | 3033 | 100 | Plus |
shep-PF | 590 | CG32423-PF | 1..590 | 1..578 | 3010 | 98 | Plus |
shep-PB | 499 | CG32423-PB | 1..499 | 96..578 | 2466 | 96 | Plus |
shep-PD | 499 | CG32423-PD | 1..499 | 96..578 | 2466 | 96 | Plus |
shep-PE | 379 | CG32423-PE | 1..379 | 211..578 | 1926 | 97.1 | Plus |