BO33730.complete Sequence
1183 bp assembled on 2012-12-20
GenBank Submission: KX796127
> BO33730.complete
GAAGTTATCAGGCGACATGGCTAACAGCTACGACATACCCAGTTGGGCTG
GAAAACCGCCCACTGGCTTACATCTGGATGTGCTAAAGGACGACAAACTA
GTACAAAAACTGATGGTGGATGAAAAAAGATGCTATCTATTTGGTCGCAA
CAGTCAAATGAACGACTTCTGCATAGACCATGCCTCTTGTTCGCGGGTCC
ACTCGGCTTTTGTCTACCACAAGCACCTCAACATAGCCTACCTCGTGGAT
CTGGGGTCCACTCATGGCACCTTTATTGGAACACTCAGATTGGAAGCGCA
CAAGCCCACACAGCTGCAGATTAATAGCACCTTCCACTTTGGGGCTTCTA
CCCGGAACTACATACTCAGGGAACGACCCTCTGGCCACCACAGCAACATC
ATGGAAGACCTGCCGCTCAGTGAAACCAGCGATGGCGCTCTCCTGGGCCT
GCCCGAAAGCCAAACGGAGCTTGATAATCTTACAGAATACAACACGGCCC
ACAATCGGCGCATCTCAATGCTGGGCATCGATGATGATACCAATATGCGA
AAGCAAAACGCCTTGAAACAGGGACGGCGCACTCGAAATGTCACATTTAA
CGATGAGGAGATTGTCATCAATCCTGAGGATGTGGATCCTAATGTGGGAC
GCTTCAGGAACTTGGTACAAACCACTGTGGTGCCCGCCAAGAGGGCACGC
TGCGACGTCAACCATATGGGCATCCATTCGGGCAACAGCAGTTTGTCCAG
TGCCAATGCCGCACATGTACACCAAATGTTCCAGCAGAGCCTAGTTGACA
TGAAGCAGCAGCATAGGGAAATGCCTCCGCCCAATGCGGTGCTCCACTCG
CCTACTAATTCCCTATATCAAGGTCTACCGGCCGAAATGCATGGCAAGGG
TGACCTAGAGCCCATCTCCCCGCTGAGCATTGGTTCCAAGTTGGGCCTAT
TGCTCCCGAATCCTGCGCCTGAAGTGCTGCCAGTCTATGACGAAGCTGTG
GAGACCTCGACATTGGCTCAAAAGTTGGCCGTCGCTAATGCAAACGTTCG
TCGCTTTGGTGAGGATCCGCATGACTCGAGTGGCGAAGGCGATTCGCTGT
GCCCACAGAAAAAGAAATACGCCAAGGAAGCATGGCCAGGTCGCAAGCCC
ATGTTGGGGCAGCTGGCAAGCTTTCTAGACCAT
BO33730.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NiPp1-RA | 1152 | CG8980-PA | 1..1149 | 17..1165 | 5640 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NiPp1-RA | 1349 | CG8980-RA | 92..1240 | 17..1165 | 5640 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17003851..17004421 | 1046..476 | 2795 | 99.3 | Minus |
| 2R | 25286936 | 2R | 17004753..17004968 | 260..45 | 1065 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17004483..17004697 | 475..261 | 1045 | 99.1 | Minus |
| 2R | 25286936 | 2R | 17003672..17003791 | 1165..1046 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:03:04 has no hits.
BO33730.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:34 Download gff for
BO33730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NiPp1-RA | 42..1190 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:15 Download gff for
BO33730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NiPp1-RA | 92..1240 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:12 Download gff for
BO33730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NiPp1-RA | 92..1240 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:12 Download gff for
BO33730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17003670..17003790 | 1047..1167 | 98 | <- | Minus |
| 2R | 17003851..17004421 | 476..1046 | 99 | <- | Minus |
| 2R | 17004483..17004697 | 261..475 | 99 | <- | Minus |
| 2R | 17004753..17004967 | 46..260 | 99 | <- | Minus |
| 2R | 17005030..17005058 | 17..45 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:15 Download gff for
BO33730.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12891175..12891295 | 1047..1167 | 98 | <- | Minus |
| arm_2R | 12891356..12891926 | 476..1046 | 99 | <- | Minus |
| arm_2R | 12891988..12892202 | 261..475 | 99 | <- | Minus |
| arm_2R | 12892258..12892472 | 46..260 | 99 | <- | Minus |
| arm_2R | 12892535..12892563 | 17..45 | 100 | | Minus |
BO33730.pep Sequence
Translation from 16 to 1183
> BO33730.pep
MANSYDIPSWAGKPPTGLHLDVLKDDKLVQKLMVDEKRCYLFGRNSQMND
FCIDHASCSRVHSAFVYHKHLNIAYLVDLGSTHGTFIGTLRLEAHKPTQL
QINSTFHFGASTRNYILRERPSGHHSNIMEDLPLSETSDGALLGLPESQT
ELDNLTEYNTAHNRRISMLGIDDDTNMRKQNALKQGRRTRNVTFNDEEIV
INPEDVDPNVGRFRNLVQTTVVPAKRARCDVNHMGIHSGNSSLSSANAAH
VHQMFQQSLVDMKQQHREMPPPNAVLHSPTNSLYQGLPAEMHGKGDLEPI
SPLSIGSKLGLLLPNPAPEVLPVYDEAVETSTLAQKLAVANANVRRFGED
PHDSSGEGDSLCPQKKKYAKEAWPGRKPMLGQLASFLDH
BO33730.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NiPp1-PA | 383 | CG8980-PA | 1..383 | 1..383 | 2025 | 100 | Plus |
| CG17168-PA | 421 | CG17168-PA | 268..399 | 5..131 | 168 | 31.2 | Plus |
