Clone BO33737 Report

Search the DGRC for BO33737

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:337
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG4159-RB
Protein status:BO33737.pep: Imported from assembly
Sequenced Size:1360

Clone Sequence Records

BO33737.complete Sequence

1360 bp assembled on 2013-09-16

GenBank Submission: KX799135

> BO33737.complete
GAAGTTATCAGTCGACATGTTTTTAAGACGACTTTTAAACGACTACACCA
AGGCAGTTCGCCTGAAAACCCTTTGCAATCCCTGGAATCGCCACAAATCC
TTCGCCGCAGCGATGTCAGAGGCTCTAGATAAACTGGAGGTGGAGAAGGA
AGCCAGGAAAGAGGCCAAAGAACTGGAGGGCGAAGCCGTGAAGGACGCCA
ACCGCATCAAGAGAACACTTAAACGCAAGAAATGGGTCGATTGGAAGGAG
CAGGACGAGAAGGATGCCGCCAACGGCGTGAAGCGAGCGCCGTTCGATCC
CGCCGACCGGATCAAGCGCAAGAAGAGCGCCATCCTGCTTAGCTACTGCG
GTGCGAACTACTATGGTATGCAGCGCAATCCCGGCATGCAGACCATCGAG
GAGGAGCTCTTCAAAGCCATGCTAAAGCACAAGTGGATTACAGAGGACAG
CTTTGAGCAGATTCAGATTTCCTGTTTCCAAAGAGCGGCCAGGACCGACA
AGGGCGTCTCCGCCGCCCGCCAGGTGTGCTCCGTCAAGCTGCCTGAGGAG
CTGGACCTGGAGGCCTTCAATGCCGATCTGCCGCAACAGATCCGTCTGTT
TGGCGTAGAACGCGTGACTAAGGGCTTCAATGCCAAGGATCAATGCAATG
CTCGGACCTACACCTACACACTGCCCACCGTGGCCTTTGCTCCGTTTGAG
GAAAAGGTCGACGACGTGCACGACACCTTCCGGATTTCACCAGAGCTGCT
GCAGAAGGTTAAAGAAACCCTGAAGCTCTACGAGGGCACGAAGAACTTCC
ACAACTTCACCAGCAAGAAAAGCTTTCTGGATCCTTCGTCCAAGCGCTTC
ATCATGTCCTTTACGAGCAGCGAGCCATTCCGGAGTCCCCAGGACATCGA
ATTTGTCACACTTAAGGTTAAGGGTCAGAGCTTTATGCTGCACCAGATTC
GCAAGATGGTGGGTCTAGCCATTGCCATTGTAAGGGGGAACACGACGGCG
GCCACTTTAGAGCGGGCACTGACGGAGGAGCGTCTGGACCTGCCGATGGC
CCCTGGACTGGGCCTCGTGCTGGACACAGTGCACTACGAGCGCTACAACG
ATCGCTACGGCAAGGACGGCATCCACAATCCGCTGACATGGCAGGCGCAG
GAGGCGCAAGTCCAGGAGTTTATCGAGAGGGAGATCTTTAGCCAGATCTA
TAAGACGGAAGCCGAGCAGCGTAACATGCTCGACTGGATAGGAACATTGC
ATTATCACTCGTACGACACGCGGACGGAGGACGCGCCTCCACCTTCCTCC
GAAGACAAGAAGGTTAAAGGTGGTGATGACGACAATGACGAAGCAAGCTT
TCTAGACCAT

BO33737.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4159-RB 1329 CG4159-PB 1..1326 17..1342 6630 100 Plus
CG4159-RA 1233 CG4159-PA 1..1230 113..1342 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4159-RB 1466 CG4159-RB 76..1401 17..1342 6630 100 Plus
CG4159-RA 1462 CG4159-RA 76..1397 17..1342 6535 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20591089..20591611 1342..820 2615 100 Minus
3R 32079331 3R 20592008..20592495 542..55 2440 100 Minus
3R 32079331 3R 20591676..20591952 819..543 1385 100 Minus
3R 32079331 3R 20592557..20592596 56..17 200 100 Minus
Blast to na_te.dros performed on 2014-11-28 13:48:31 has no hits.

BO33737.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 11:49:39 Download gff for BO33737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 84..1401 25..1344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:35:28 Download gff for BO33737.complete
Subject Subject Range Query Range Percent Splice Strand
CG4159-RB 84..1401 25..1344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:35:28 Download gff for BO33737.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20591676..20591952 543..819 100 <- Minus
3R 20591087..20591611 820..1344 99 <- Minus
3R 20592008..20592493 57..542 100 <- Minus
3R 20592557..20592588 25..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 11:49:39 Download gff for BO33737.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16416809..16417333 820..1344 99 <- Minus
arm_3R 16417398..16417674 543..819 100 <- Minus
arm_3R 16417730..16418215 57..542 100 <- Minus
arm_3R 16418279..16418310 25..56 100   Minus

BO33737.pep Sequence

Translation from 16 to 1360

> BO33737.pep
MFLRRLLNDYTKAVRLKTLCNPWNRHKSFAAAMSEALDKLEVEKEARKEA
KELEGEAVKDANRIKRTLKRKKWVDWKEQDEKDAANGVKRAPFDPADRIK
RKKSAILLSYCGANYYGMQRNPGMQTIEEELFKAMLKHKWITEDSFEQIQ
ISCFQRAARTDKGVSAARQVCSVKLPEELDLEAFNADLPQQIRLFGVERV
TKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKE
TLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLK
VKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEERLDLPMAPGLGL
VLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREIFSQIYKTEAE
QRNMLDWIGTLHYHSYDTRTEDAPPPSSEDKKVKGGDDDNDEASFLDH

BO33737.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG4159-PB 442 CG4159-PB 1..442 1..442 2307 100 Plus
CG4159-PA 410 CG4159-PA 1..410 33..442 2135 100 Plus