BO33739.complete Sequence
991 bp assembled on 2012-12-20
GenBank Submission: KX797880
> BO33739.complete
GAAGTTATCAGTCGACATGGAAAAAATGGAAAACCCAAGCGAGATTACTG
AGGAACAGCCAACTACCACACACGAGTACCAGCCGCGTCTGAACGAGATA
GCCCAAAAGTTTCTCGCCGATTTGGACGAGGAGCGCCAGCGTTTGTCCGC
GGAGTTTCCACTTTGCGCACTGCTAATCGACGAGGCTAGGGACCGTGTCT
ACGCCACTGGTCGTATTCCCGGCAAGGAACTCTACGCAGACGTGTACCGG
CAGAAGCCGATGAAGATTATTCAAAAGGTCTTCGTGCCCGTTAACCAGTA
TCCCAAGTTCAACTTCGCTGGCAAGATCCTGGGGCCCAAGGGGAACTCGC
TGCGTCGCCTTCAGGAGGAGACCCAGTGCAAGATTGCCCTCAAGGGTCGC
AGTTCGATGCGCGATCGTAACAAAGAGGAAGAGCTGCGCAGCGACCCAAG
ATATGCCCATCTTCAGAAGAATCTCTTTCTGGAGGTCAGCACGGTGGCCA
TACCGGCGGAGTGCCATTCCCGCATAGCCTACGCCCTGGCCGAGATTCGT
AAGTATCTGATTCCAGACAATAACGACGAGGTTTCGCACGAGCAGCTGCG
CGAGCTGATGGAAATAGATCCCGAGTCGGCCAAGAACTTTAAGGGACTCA
ATCTGGAGGCGTACAGATCTGTCAGGGACAGCAATGGGGCTTCTAAGTAC
ATCAATCTGATTAAGCGGGTTGCGGAAAATCCGTCCAAAGTCGCCGATAT
GGAGCAGGTGGACTATGATTATGATGAACATCATATGCCCCCCATTCATC
TGCCCACGGGCTATGAGTACAGCATACAACGTCCATCAAAAATAGTTGCG
AAATTTAAACGTCCATATCCGTATCCGACTGACATGAAACCTGTGCGCGA
ACCGCCCATAAAGTTCTATAAGCCCAATCCTGGTATAGGCACCTACGTTA
TGAAATCTATGCTTGGAGCACAGGCAAGCTTTCTAGACCAT
BO33739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4021-RA | 960 | CG4021-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
| qkr58E-3-RD | 954 | CG3584-PD | 1..926 | 26..930 | 2385 | 85 | Plus |
| qkr58E-3-RB | 954 | CG3584-PB | 1..926 | 26..930 | 2385 | 85 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4021-RA | 1201 | CG4021-RA | 104..1060 | 17..973 | 4785 | 100 | Plus |
| qkr58E-3-RD | 1729 | CG3584-RD | 93..1022 | 22..930 | 2405 | 85 | Plus |
| qkr58E-3-RB | 1433 | CG3584-RB | 93..1022 | 22..930 | 2405 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21773807..21774167 | 306..666 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 22410687..22411053 | 666..306 | 1200 | 89.1 | Minus |
| 2L | 23513712 | 2L | 20863421..20863772 | 660..306 | 1200 | 90.4 | Minus |
| 2R | 25286936 | 2R | 22595151..22595517 | 306..666 | 1125 | 87.7 | Plus |
| 2R | 25286936 | 2R | 22651051..22651417 | 306..666 | 1095 | 87.2 | Plus |
| 2R | 25286936 | 2R | 21773398..21773566 | 17..185 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 21774586..21774735 | 824..973 | 735 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21773625..21773747 | 185..307 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 22411293..22411453 | 185..22 | 560 | 90.9 | Minus |
| 2R | 25286936 | 2R | 22650703..22650809 | 77..183 | 460 | 95.3 | Plus |
| 2R | 25286936 | 2R | 21774430..21774518 | 739..827 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 22594803..22594909 | 77..183 | 445 | 94.4 | Plus |
| 2L | 23513712 | 2L | 20901193..20901299 | 79..185 | 430 | 93.5 | Plus |
| 2R | 25286936 | 2R | 22594974..22595091 | 190..307 | 425 | 90.7 | Plus |
| 2R | 25286936 | 2R | 22411112..22411229 | 307..190 | 410 | 89.8 | Minus |
| 2L | 23513712 | 2L | 20923997..20924111 | 71..185 | 410 | 90.4 | Plus |
| 2L | 23513712 | 2L | 20924173..20924290 | 190..307 | 410 | 89.8 | Plus |
| 2R | 25286936 | 2R | 22650874..22650991 | 190..307 | 395 | 89 | Plus |
| 2R | 25286936 | 2R | 21774248..21774322 | 664..738 | 375 | 100 | Plus |
| 2L | 23513712 | 2L | 20901339..20901440 | 206..307 | 360 | 90.2 | Plus |
| 2R | 25286936 | 2R | 17471170..17471306 | 306..442 | 280 | 80.3 | Plus |
| 2R | 25286936 | 2R | 22652029..22652106 | 853..930 | 270 | 89.7 | Plus |
| 2R | 25286936 | 2R | 22416544..22416623 | 305..384 | 250 | 87.5 | Plus |
| 2R | 25286936 | 2R | 22651759..22651844 | 739..824 | 250 | 86 | Plus |
| 2R | 25286936 | 2R | 22409915..22409977 | 930..868 | 240 | 92.1 | Minus |
| 2R | 25286936 | 2R | 22414818..22414963 | 442..297 | 235 | 77.4 | Minus |
| 2L | 23513712 | 2L | 20862869..20862980 | 972..861 | 230 | 80.4 | Minus |
| 2R | 25286936 | 2R | 22595859..22595907 | 739..787 | 185 | 91.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 13:03:14 has no hits.
BO33739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-12-20 11:59:36 Download gff for
BO33739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4021-RA | 52..1008 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:20 Download gff for
BO33739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4021-RA | 104..1060 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:16 Download gff for
BO33739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4021-RA | 104..1060 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:16 Download gff for
BO33739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21773398..21773566 | 17..185 | 100 | -> | Plus |
| 2R | 21773626..21773747 | 186..307 | 100 | -> | Plus |
| 2R | 21773809..21774167 | 308..666 | 100 | -> | Plus |
| 2R | 21774251..21774322 | 667..738 | 100 | -> | Plus |
| 2R | 21774430..21774518 | 739..827 | 100 | -> | Plus |
| 2R | 21774590..21774735 | 828..975 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:20 Download gff for
BO33739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17660903..17661071 | 17..185 | 100 | -> | Plus |
| arm_2R | 17661131..17661252 | 186..307 | 100 | -> | Plus |
| arm_2R | 17661314..17661672 | 308..666 | 100 | -> | Plus |
| arm_2R | 17661756..17661827 | 667..738 | 100 | -> | Plus |
| arm_2R | 17661935..17662023 | 739..827 | 100 | -> | Plus |
| arm_2R | 17662095..17662240 | 828..975 | 98 | | Plus |
BO33739.pep Sequence
Translation from 16 to 991
> BO33739.pep
MEKMENPSEITEEQPTTTHEYQPRLNEIAQKFLADLDEERQRLSAEFPLC
ALLIDEARDRVYATGRIPGKELYADVYRQKPMKIIQKVFVPVNQYPKFNF
AGKILGPKGNSLRRLQEETQCKIALKGRSSMRDRNKEEELRSDPRYAHLQ
KNLFLEVSTVAIPAECHSRIAYALAEIRKYLIPDNNDEVSHEQLRELMEI
DPESAKNFKGLNLEAYRSVRDSNGASKYINLIKRVAENPSKVADMEQVDY
DYDEHHMPPIHLPTGYEYSIQRPSKIVAKFKRPYPYPTDMKPVREPPIKF
YKPNPGIGTYVMKSMLGAQASFLDH
BO33739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4021-PA | 319 | CG4021-PA | 1..319 | 1..319 | 1669 | 100 | Plus |
| qkr58E-3-PD | 317 | CG3584-PD | 1..309 | 4..305 | 1221 | 79.2 | Plus |
| qkr58E-3-PB | 317 | CG3584-PB | 1..309 | 4..305 | 1221 | 79.2 | Plus |
| qkr58E-3-PC | 317 | CG3584-PC | 1..309 | 4..305 | 1221 | 79.2 | Plus |
| nsr-PB | 340 | CG3875-PB | 1..318 | 4..305 | 1124 | 71.4 | Plus |
